Strain Fitness in Serratia liquefaciens MT49 around IAI46_23215

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23200 and IAI46_23205 are separated by 376 nucleotidesIAI46_23205 and IAI46_23210 are separated by 51 nucleotidesIAI46_23210 and IAI46_23215 are separated by 13 nucleotidesIAI46_23215 and IAI46_23220 are separated by 81 nucleotides IAI46_23200: IAI46_23200 - homoserine O-succinyltransferase, at 4,960,094 to 4,961,023 _23200 IAI46_23205: IAI46_23205 - 5S ribosomal RNA, at 4,961,400 to 4,961,515 _23205 IAI46_23210: IAI46_23210 - tRNA-Thr, at 4,961,567 to 4,961,642 _23210 IAI46_23215: IAI46_23215 - 5S ribosomal RNA, at 4,961,656 to 4,961,771 _23215 IAI46_23220: IAI46_23220 - 23S ribosomal RNA, at 4,961,853 to 4,964,790 _23220 Position (kb) 4961 4962Strain fitness (log2 ratio) -2 -1 0 1at 4960.758 kb on + strand, within IAI46_23200at 4960.758 kb on + strand, within IAI46_23200at 4960.997 kb on + strandat 4960.998 kb on - strandat 4961.029 kb on - strandat 4961.063 kb on + strandat 4961.064 kb on - strandat 4961.157 kb on + strandat 4961.158 kb on - strandat 4961.211 kb on + strandat 4961.212 kb on - strandat 4961.212 kb on - strandat 4961.212 kb on - strandat 4961.341 kb on + strandat 4961.341 kb on + strandat 4961.341 kb on + strandat 4961.342 kb on - strandat 4961.342 kb on - strandat 4961.342 kb on - strandat 4961.378 kb on - strandat 4961.415 kb on - strand, within IAI46_23205at 4961.527 kb on - strandat 4961.548 kb on - strandat 4961.562 kb on + strandat 4961.563 kb on - strandat 4961.563 kb on - strandat 4961.563 kb on - strandat 4961.671 kb on - strand, within IAI46_23215at 4961.671 kb on - strand, within IAI46_23215

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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4,960,758 + IAI46_23200 0.71 -0.1
4,960,758 + IAI46_23200 0.71 +0.3
4,960,997 + -0.4
4,960,998 - -0.0
4,961,029 - +0.1
4,961,063 + +0.3
4,961,064 - -0.3
4,961,157 + +1.7
4,961,158 - -1.2
4,961,211 + +0.3
4,961,212 - +0.4
4,961,212 - -0.4
4,961,212 - +0.1
4,961,341 + -0.2
4,961,341 + -1.6
4,961,341 + +0.3
4,961,342 - +0.2
4,961,342 - -0.3
4,961,342 - -0.7
4,961,378 - +0.4
4,961,415 - IAI46_23205 0.13 -0.4
4,961,527 - -0.5
4,961,548 - -0.0
4,961,562 + -0.9
4,961,563 - -0.4
4,961,563 - +0.6
4,961,563 - -0.2
4,961,671 - IAI46_23215 0.13 -0.5
4,961,671 - IAI46_23215 0.13 -1.8

Or see this region's nucleotide sequence