Strain Fitness in Serratia liquefaciens MT49 around IAI46_22090

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22080 and IAI46_22085 are separated by 131 nucleotidesIAI46_22085 and IAI46_22090 are separated by 107 nucleotidesIAI46_22090 and IAI46_22095 are separated by 252 nucleotides IAI46_22080: IAI46_22080 - undecaprenyl-diphosphate phosphatase, at 4,702,277 to 4,703,101 _22080 IAI46_22085: IAI46_22085 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 4,703,233 to 4,703,592 _22085 IAI46_22090: IAI46_22090 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 4,703,700 to 4,704,338 _22090 IAI46_22095: IAI46_22095 - ferrichrome porin FhuA, at 4,704,591 to 4,706,786 _22095 Position (kb) 4703 4704 4705Strain fitness (log2 ratio) -2 -1 0 1at 4702.728 kb on + strand, within IAI46_22080at 4702.728 kb on + strand, within IAI46_22080at 4702.728 kb on + strand, within IAI46_22080at 4702.729 kb on - strand, within IAI46_22080at 4702.729 kb on - strand, within IAI46_22080at 4702.729 kb on - strand, within IAI46_22080at 4702.729 kb on - strand, within IAI46_22080at 4702.791 kb on - strand, within IAI46_22080at 4703.021 kb on - strandat 4703.045 kb on + strandat 4703.077 kb on + strandat 4703.120 kb on - strandat 4703.125 kb on + strandat 4703.131 kb on + strandat 4703.133 kb on + strandat 4703.133 kb on + strandat 4703.133 kb on + strandat 4703.134 kb on - strandat 4703.209 kb on + strandat 4703.210 kb on - strandat 4703.221 kb on + strandat 4703.221 kb on + strandat 4703.222 kb on - strandat 4703.222 kb on - strandat 4703.642 kb on - strandat 4703.648 kb on - strandat 4703.648 kb on - strandat 4703.648 kb on - strandat 4703.651 kb on - strandat 4703.658 kb on + strandat 4703.659 kb on - strandat 4703.659 kb on - strandat 4703.659 kb on - strandat 4703.682 kb on - strandat 4703.699 kb on + strandat 4703.700 kb on - strandat 4703.726 kb on + strandat 4703.726 kb on + strandat 4703.727 kb on - strandat 4703.727 kb on - strandat 4703.736 kb on + strandat 4703.737 kb on - strandat 4703.737 kb on - strandat 4703.919 kb on + strand, within IAI46_22090at 4703.919 kb on + strand, within IAI46_22090at 4703.919 kb on + strand, within IAI46_22090at 4703.919 kb on + strand, within IAI46_22090at 4703.920 kb on - strand, within IAI46_22090at 4703.920 kb on - strand, within IAI46_22090at 4703.927 kb on + strand, within IAI46_22090at 4703.927 kb on + strand, within IAI46_22090at 4703.927 kb on + strand, within IAI46_22090at 4703.927 kb on + strand, within IAI46_22090at 4703.928 kb on - strand, within IAI46_22090at 4703.928 kb on - strand, within IAI46_22090at 4703.928 kb on - strand, within IAI46_22090at 4703.985 kb on + strand, within IAI46_22090at 4704.083 kb on + strand, within IAI46_22090at 4704.159 kb on + strand, within IAI46_22090at 4704.159 kb on + strand, within IAI46_22090at 4704.159 kb on + strand, within IAI46_22090at 4704.159 kb on + strand, within IAI46_22090at 4704.159 kb on + strand, within IAI46_22090at 4704.160 kb on - strand, within IAI46_22090at 4704.160 kb on - strand, within IAI46_22090at 4704.336 kb on + strandat 4704.416 kb on + strandat 4704.417 kb on - strandat 4704.417 kb on - strandat 4704.436 kb on + strandat 4704.437 kb on - strandat 4704.460 kb on - strandat 4704.476 kb on + strandat 4704.476 kb on + strandat 4704.477 kb on - strandat 4704.477 kb on - strandat 4704.477 kb on - strandat 4704.477 kb on - strandat 4704.479 kb on + strandat 4704.479 kb on + strandat 4704.480 kb on - strandat 4704.581 kb on + strandat 4704.590 kb on + strandat 4704.616 kb on + strandat 4704.626 kb on + strandat 4704.635 kb on + strandat 4704.652 kb on + strandat 4704.652 kb on + strandat 4704.653 kb on - strandat 4704.653 kb on - strandat 4704.653 kb on - strandat 4704.656 kb on + strandat 4704.657 kb on - strandat 4704.672 kb on + strandat 4704.739 kb on + strandat 4704.756 kb on + strandat 4704.757 kb on - strandat 4704.888 kb on + strand, within IAI46_22095at 4704.888 kb on + strand, within IAI46_22095at 4704.888 kb on + strand, within IAI46_22095at 4704.889 kb on - strand, within IAI46_22095at 4704.889 kb on - strand, within IAI46_22095at 4704.890 kb on + strand, within IAI46_22095at 4704.901 kb on + strand, within IAI46_22095at 4704.931 kb on + strand, within IAI46_22095at 4704.938 kb on + strand, within IAI46_22095at 4704.977 kb on + strand, within IAI46_22095at 4704.981 kb on + strand, within IAI46_22095at 4704.982 kb on - strand, within IAI46_22095at 4705.000 kb on + strand, within IAI46_22095at 4705.010 kb on + strand, within IAI46_22095at 4705.010 kb on + strand, within IAI46_22095at 4705.010 kb on + strand, within IAI46_22095at 4705.010 kb on + strand, within IAI46_22095at 4705.011 kb on - strand, within IAI46_22095at 4705.014 kb on + strand, within IAI46_22095at 4705.014 kb on + strand, within IAI46_22095at 4705.014 kb on + strand, within IAI46_22095at 4705.014 kb on + strand, within IAI46_22095at 4705.014 kb on + strand, within IAI46_22095at 4705.015 kb on - strand, within IAI46_22095at 4705.015 kb on - strand, within IAI46_22095at 4705.015 kb on - strand, within IAI46_22095at 4705.015 kb on - strand, within IAI46_22095at 4705.257 kb on - strand, within IAI46_22095at 4705.257 kb on - strand, within IAI46_22095at 4705.261 kb on - strand, within IAI46_22095at 4705.263 kb on + strand, within IAI46_22095at 4705.306 kb on - strand, within IAI46_22095

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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4,702,728 + IAI46_22080 0.55 +0.0
4,702,728 + IAI46_22080 0.55 -1.0
4,702,728 + IAI46_22080 0.55 -0.3
4,702,729 - IAI46_22080 0.55 +0.4
4,702,729 - IAI46_22080 0.55 -0.7
4,702,729 - IAI46_22080 0.55 +0.6
4,702,729 - IAI46_22080 0.55 -0.2
4,702,791 - IAI46_22080 0.62 -0.4
4,703,021 - -2.3
4,703,045 + -0.4
4,703,077 + +0.3
4,703,120 - -0.7
4,703,125 + -2.1
4,703,131 + +0.5
4,703,133 + +1.0
4,703,133 + -1.5
4,703,133 + -0.0
4,703,134 - -0.0
4,703,209 + -0.1
4,703,210 - +0.1
4,703,221 + +0.1
4,703,221 + -0.1
4,703,222 - -0.4
4,703,222 - +1.5
4,703,642 - -0.4
4,703,648 - -0.4
4,703,648 - -0.6
4,703,648 - -0.2
4,703,651 - -0.6
4,703,658 + -0.1
4,703,659 - +0.4
4,703,659 - +0.2
4,703,659 - +0.2
4,703,682 - +1.3
4,703,699 + -0.1
4,703,700 - -0.3
4,703,726 + -0.9
4,703,726 + -0.9
4,703,727 - -2.0
4,703,727 - +1.4
4,703,736 + +0.3
4,703,737 - +0.3
4,703,737 - +0.6
4,703,919 + IAI46_22090 0.34 +1.0
4,703,919 + IAI46_22090 0.34 +0.6
4,703,919 + IAI46_22090 0.34 +0.4
4,703,919 + IAI46_22090 0.34 -0.5
4,703,920 - IAI46_22090 0.34 +1.3
4,703,920 - IAI46_22090 0.34 -0.5
4,703,927 + IAI46_22090 0.36 +1.0
4,703,927 + IAI46_22090 0.36 -0.5
4,703,927 + IAI46_22090 0.36 -0.2
4,703,927 + IAI46_22090 0.36 +0.3
4,703,928 - IAI46_22090 0.36 -2.1
4,703,928 - IAI46_22090 0.36 -1.0
4,703,928 - IAI46_22090 0.36 -0.9
4,703,985 + IAI46_22090 0.45 -0.8
4,704,083 + IAI46_22090 0.60 +1.6
4,704,159 + IAI46_22090 0.72 +0.2
4,704,159 + IAI46_22090 0.72 +0.2
4,704,159 + IAI46_22090 0.72 +0.4
4,704,159 + IAI46_22090 0.72 +0.6
4,704,159 + IAI46_22090 0.72 -0.9
4,704,160 - IAI46_22090 0.72 -0.9
4,704,160 - IAI46_22090 0.72 +0.9
4,704,336 + -0.7
4,704,416 + -0.0
4,704,417 - +0.1
4,704,417 - +0.8
4,704,436 + +0.3
4,704,437 - -0.5
4,704,460 - +1.0
4,704,476 + +0.8
4,704,476 + +0.4
4,704,477 - +0.7
4,704,477 - -0.1
4,704,477 - -2.5
4,704,477 - +0.3
4,704,479 + +0.2
4,704,479 + -0.0
4,704,480 - -1.5
4,704,581 + +0.3
4,704,590 + +0.4
4,704,616 + -0.6
4,704,626 + -0.6
4,704,635 + +1.4
4,704,652 + -1.3
4,704,652 + -0.3
4,704,653 - +0.4
4,704,653 - +0.4
4,704,653 - +0.8
4,704,656 + -0.2
4,704,657 - -0.2
4,704,672 + +1.2
4,704,739 + +0.4
4,704,756 + -0.2
4,704,757 - +0.2
4,704,888 + IAI46_22095 0.14 +0.1
4,704,888 + IAI46_22095 0.14 +0.3
4,704,888 + IAI46_22095 0.14 +0.3
4,704,889 - IAI46_22095 0.14 +0.1
4,704,889 - IAI46_22095 0.14 +0.1
4,704,890 + IAI46_22095 0.14 +0.5
4,704,901 + IAI46_22095 0.14 +0.4
4,704,931 + IAI46_22095 0.15 +0.4
4,704,938 + IAI46_22095 0.16 -0.2
4,704,977 + IAI46_22095 0.18 +0.8
4,704,981 + IAI46_22095 0.18 +0.8
4,704,982 - IAI46_22095 0.18 +0.1
4,705,000 + IAI46_22095 0.19 -0.2
4,705,010 + IAI46_22095 0.19 -0.5
4,705,010 + IAI46_22095 0.19 +1.3
4,705,010 + IAI46_22095 0.19 +0.0
4,705,010 + IAI46_22095 0.19 -0.7
4,705,011 - IAI46_22095 0.19 +0.1
4,705,014 + IAI46_22095 0.19 +0.5
4,705,014 + IAI46_22095 0.19 -1.3
4,705,014 + IAI46_22095 0.19 +0.5
4,705,014 + IAI46_22095 0.19 +0.7
4,705,014 + IAI46_22095 0.19 -1.7
4,705,015 - IAI46_22095 0.19 +0.0
4,705,015 - IAI46_22095 0.19 +0.5
4,705,015 - IAI46_22095 0.19 +0.8
4,705,015 - IAI46_22095 0.19 -0.9
4,705,257 - IAI46_22095 0.30 +0.2
4,705,257 - IAI46_22095 0.30 +0.3
4,705,261 - IAI46_22095 0.31 +0.2
4,705,263 + IAI46_22095 0.31 +0.1
4,705,306 - IAI46_22095 0.33 -0.1

Or see this region's nucleotide sequence