Strain Fitness in Serratia liquefaciens MT49 around IAI46_14515

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14505 and IAI46_14510 are separated by 56 nucleotidesIAI46_14510 and IAI46_14515 are separated by 136 nucleotidesIAI46_14515 and IAI46_14520 are separated by 25 nucleotidesIAI46_14520 and IAI46_14525 are separated by 3 nucleotides IAI46_14505: IAI46_14505 - lytic murein transglycosylase, at 3,076,250 to 3,077,314 _14505 IAI46_14510: IAI46_14510 - YcgL domain-containing protein, at 3,077,371 to 3,077,643 _14510 IAI46_14515: IAI46_14515 - septum site-determining protein MinC, at 3,077,780 to 3,078,481 _14515 IAI46_14520: IAI46_14520 - septum site-determining protein MinD, at 3,078,507 to 3,079,319 _14520 IAI46_14525: IAI46_14525 - cell division topological specificity factor MinE, at 3,079,323 to 3,079,592 _14525 Position (kb) 3077 3078 3079Strain fitness (log2 ratio) -2 -1 0 1at 3076.900 kb on - strand, within IAI46_14505at 3076.925 kb on - strand, within IAI46_14505at 3077.136 kb on + strand, within IAI46_14505at 3077.270 kb on + strandat 3077.270 kb on + strandat 3077.357 kb on + strandat 3077.594 kb on + strand, within IAI46_14510at 3077.595 kb on - strand, within IAI46_14510at 3077.595 kb on - strand, within IAI46_14510at 3077.617 kb on - strandat 3077.626 kb on - strandat 3077.627 kb on + strandat 3077.649 kb on + strandat 3077.659 kb on + strandat 3077.686 kb on + strandat 3077.707 kb on + strandat 3077.708 kb on - strandat 3077.752 kb on + strandat 3077.777 kb on + strandat 3077.859 kb on + strand, within IAI46_14515at 3077.860 kb on - strand, within IAI46_14515at 3077.862 kb on + strand, within IAI46_14515at 3078.200 kb on + strand, within IAI46_14515at 3078.325 kb on + strand, within IAI46_14515at 3078.325 kb on + strand, within IAI46_14515at 3078.416 kb on + strandat 3078.416 kb on + strandat 3078.465 kb on + strandat 3078.474 kb on + strandat 3078.518 kb on + strandat 3078.518 kb on + strandat 3078.518 kb on + strandat 3078.518 kb on + strandat 3078.955 kb on + strand, within IAI46_14520at 3079.221 kb on + strand, within IAI46_14520

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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3,076,900 - IAI46_14505 0.61 -0.7
3,076,925 - IAI46_14505 0.63 +0.5
3,077,136 + IAI46_14505 0.83 +0.3
3,077,270 + +0.5
3,077,270 + -0.4
3,077,357 + +1.4
3,077,594 + IAI46_14510 0.82 -0.5
3,077,595 - IAI46_14510 0.82 -1.2
3,077,595 - IAI46_14510 0.82 -1.7
3,077,617 - -0.9
3,077,626 - -0.9
3,077,627 + +0.6
3,077,649 + -0.1
3,077,659 + -0.0
3,077,686 + -0.5
3,077,707 + +1.2
3,077,708 - +1.4
3,077,752 + +0.5
3,077,777 + -0.2
3,077,859 + IAI46_14515 0.11 -1.5
3,077,860 - IAI46_14515 0.11 +1.6
3,077,862 + IAI46_14515 0.12 +0.1
3,078,200 + IAI46_14515 0.60 -0.3
3,078,325 + IAI46_14515 0.78 -1.1
3,078,325 + IAI46_14515 0.78 -2.1
3,078,416 + -1.2
3,078,416 + +1.0
3,078,465 + +0.8
3,078,474 + +0.6
3,078,518 + -1.3
3,078,518 + +0.4
3,078,518 + -1.5
3,078,518 + +0.2
3,078,955 + IAI46_14520 0.55 +0.7
3,079,221 + IAI46_14520 0.88 -0.6

Or see this region's nucleotide sequence