Strain Fitness in Serratia liquefaciens MT49 around IAI46_14330

Experiment: Cadmium acetate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_14325 and IAI46_14330 are separated by 93 nucleotidesIAI46_14330 and IAI46_14335 are separated by 24 nucleotidesIAI46_14335 and IAI46_14340 are separated by 231 nucleotides IAI46_14325: IAI46_14325 - signal peptide peptidase SppA, at 3,038,893 to 3,040,749 _14325 IAI46_14330: IAI46_14330 - asparaginase, at 3,040,843 to 3,041,859 _14330 IAI46_14335: IAI46_14335 - bifunctional nicotinamidase/pyrazinamidase, at 3,041,884 to 3,042,516 _14335 IAI46_14340: IAI46_14340 - glycoside hydrolase family 18 protein, at 3,042,748 to 3,044,028 _14340 Position (kb) 3040 3041 3042Strain fitness (log2 ratio) -2 -1 0 1 2at 3040.186 kb on - strand, within IAI46_14325at 3040.534 kb on - strand, within IAI46_14325at 3040.806 kb on + strandat 3040.807 kb on - strandat 3040.831 kb on - strandat 3040.870 kb on + strandat 3041.003 kb on - strand, within IAI46_14330at 3041.087 kb on - strand, within IAI46_14330at 3041.323 kb on - strand, within IAI46_14330at 3041.843 kb on + strandat 3041.844 kb on - strandat 3042.057 kb on + strand, within IAI46_14335at 3042.144 kb on - strand, within IAI46_14335at 3042.222 kb on + strand, within IAI46_14335at 3042.222 kb on + strand, within IAI46_14335at 3042.222 kb on + strand, within IAI46_14335at 3042.238 kb on + strand, within IAI46_14335at 3042.344 kb on - strand, within IAI46_14335at 3042.399 kb on - strand, within IAI46_14335at 3042.423 kb on + strand, within IAI46_14335at 3042.514 kb on + strandat 3042.663 kb on - strandat 3042.663 kb on - strandat 3042.664 kb on + strandat 3042.664 kb on + strandat 3042.694 kb on + strandat 3042.699 kb on + strandat 3042.744 kb on + strandat 3042.745 kb on - strandat 3042.832 kb on + strandat 3042.833 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
remove
3,040,186 - IAI46_14325 0.70 +2.0
3,040,534 - IAI46_14325 0.88 +1.0
3,040,806 + -0.7
3,040,807 - +1.4
3,040,831 - -1.1
3,040,870 + -2.2
3,041,003 - IAI46_14330 0.16 +0.1
3,041,087 - IAI46_14330 0.24 -0.9
3,041,323 - IAI46_14330 0.47 -0.1
3,041,843 + +0.0
3,041,844 - -0.8
3,042,057 + IAI46_14335 0.27 -0.0
3,042,144 - IAI46_14335 0.41 -0.1
3,042,222 + IAI46_14335 0.53 +0.2
3,042,222 + IAI46_14335 0.53 -0.3
3,042,222 + IAI46_14335 0.53 -0.6
3,042,238 + IAI46_14335 0.56 -1.9
3,042,344 - IAI46_14335 0.73 +1.0
3,042,399 - IAI46_14335 0.81 -0.9
3,042,423 + IAI46_14335 0.85 +0.2
3,042,514 + -0.6
3,042,663 - +0.5
3,042,663 - -1.9
3,042,664 + -2.3
3,042,664 + -1.5
3,042,694 + +1.4
3,042,699 + -1.8
3,042,744 + +0.8
3,042,745 - -0.5
3,042,832 + +0.2
3,042,833 - +0.8

Or see this region's nucleotide sequence