Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13730 and IAI46_13735 overlap by 4 nucleotides IAI46_13735 and IAI46_13740 overlap by 11 nucleotides IAI46_13740 and IAI46_13745 are separated by 296 nucleotides IAI46_13745 and IAI46_13750 are separated by 17 nucleotides
IAI46_13730: IAI46_13730 - helix-turn-helix domain-containing protein, at 2,925,901 to 2,926,923
_13730
IAI46_13735: IAI46_13735 - DUF4222 domain-containing protein, at 2,926,920 to 2,927,102
_13735
IAI46_13740: IAI46_13740 - KilA-N domain-containing protein, at 2,927,092 to 2,927,832
_13740
IAI46_13745: IAI46_13745 - hypothetical protein, at 2,928,129 to 2,928,443
_13745
IAI46_13750: IAI46_13750 - helix-turn-helix transcriptional regulator, at 2,928,461 to 2,928,709
_13750
Position (kb)
2927
2928 Strain fitness (log2 ratio)
-2
-1
0
1 at 2926.144 kb on - strand, within IAI46_13730 at 2926.166 kb on - strand, within IAI46_13730 at 2926.273 kb on - strand, within IAI46_13730 at 2926.527 kb on + strand, within IAI46_13730 at 2926.528 kb on - strand, within IAI46_13730 at 2926.573 kb on + strand, within IAI46_13730 at 2926.573 kb on + strand, within IAI46_13730 at 2926.574 kb on - strand, within IAI46_13730 at 2926.574 kb on - strand, within IAI46_13730 at 2926.627 kb on + strand, within IAI46_13730 at 2926.650 kb on + strand, within IAI46_13730 at 2926.664 kb on + strand, within IAI46_13730 at 2926.668 kb on - strand, within IAI46_13730 at 2926.684 kb on - strand, within IAI46_13730 at 2926.737 kb on + strand, within IAI46_13730 at 2926.738 kb on - strand, within IAI46_13730 at 2926.924 kb on - strand at 2927.076 kb on + strand, within IAI46_13735 at 2927.093 kb on + strand at 2927.093 kb on + strand at 2927.094 kb on - strand at 2927.148 kb on - strand at 2927.148 kb on - strand at 2927.199 kb on + strand, within IAI46_13740 at 2927.368 kb on + strand, within IAI46_13740 at 2927.369 kb on - strand, within IAI46_13740 at 2927.392 kb on + strand, within IAI46_13740 at 2927.405 kb on - strand, within IAI46_13740 at 2927.405 kb on - strand, within IAI46_13740 at 2927.405 kb on - strand, within IAI46_13740 at 2927.413 kb on - strand, within IAI46_13740 at 2927.576 kb on + strand, within IAI46_13740 at 2927.597 kb on + strand, within IAI46_13740 at 2927.717 kb on + strand, within IAI46_13740 at 2927.799 kb on + strand at 2927.799 kb on + strand at 2927.800 kb on - strand at 2927.927 kb on + strand at 2928.005 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 2,926,144 - IAI46_13730 0.24 -1.7 2,926,166 - IAI46_13730 0.26 +1.4 2,926,273 - IAI46_13730 0.36 +0.1 2,926,527 + IAI46_13730 0.61 +1.4 2,926,528 - IAI46_13730 0.61 -0.1 2,926,573 + IAI46_13730 0.66 -0.4 2,926,573 + IAI46_13730 0.66 -1.4 2,926,574 - IAI46_13730 0.66 +0.8 2,926,574 - IAI46_13730 0.66 -0.4 2,926,627 + IAI46_13730 0.71 +1.6 2,926,650 + IAI46_13730 0.73 +0.9 2,926,664 + IAI46_13730 0.75 -0.7 2,926,668 - IAI46_13730 0.75 +0.6 2,926,684 - IAI46_13730 0.77 -0.4 2,926,737 + IAI46_13730 0.82 +0.8 2,926,738 - IAI46_13730 0.82 -0.2 2,926,924 - -2.1 2,927,076 + IAI46_13735 0.85 +0.5 2,927,093 + -0.6 2,927,093 + -0.1 2,927,094 - -0.6 2,927,148 - +0.7 2,927,148 - -1.5 2,927,199 + IAI46_13740 0.14 +0.8 2,927,368 + IAI46_13740 0.37 -1.2 2,927,369 - IAI46_13740 0.37 -1.7 2,927,392 + IAI46_13740 0.40 +0.3 2,927,405 - IAI46_13740 0.42 -0.7 2,927,405 - IAI46_13740 0.42 +0.9 2,927,405 - IAI46_13740 0.42 +0.8 2,927,413 - IAI46_13740 0.43 -0.4 2,927,576 + IAI46_13740 0.65 -1.3 2,927,597 + IAI46_13740 0.68 -0.5 2,927,717 + IAI46_13740 0.84 +0.9 2,927,799 + +0.2 2,927,799 + +0.0 2,927,800 - -0.5 2,927,927 + -0.5 2,928,005 + +0.6
Or see this region's nucleotide sequence