Strain Fitness in Serratia liquefaciens MT49 around IAI46_13740

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13730 and IAI46_13735 overlap by 4 nucleotidesIAI46_13735 and IAI46_13740 overlap by 11 nucleotidesIAI46_13740 and IAI46_13745 are separated by 296 nucleotidesIAI46_13745 and IAI46_13750 are separated by 17 nucleotides IAI46_13730: IAI46_13730 - helix-turn-helix domain-containing protein, at 2,925,901 to 2,926,923 _13730 IAI46_13735: IAI46_13735 - DUF4222 domain-containing protein, at 2,926,920 to 2,927,102 _13735 IAI46_13740: IAI46_13740 - KilA-N domain-containing protein, at 2,927,092 to 2,927,832 _13740 IAI46_13745: IAI46_13745 - hypothetical protein, at 2,928,129 to 2,928,443 _13745 IAI46_13750: IAI46_13750 - helix-turn-helix transcriptional regulator, at 2,928,461 to 2,928,709 _13750 Position (kb) 2927 2928Strain fitness (log2 ratio) -2 -1 0 1at 2926.144 kb on - strand, within IAI46_13730at 2926.166 kb on - strand, within IAI46_13730at 2926.273 kb on - strand, within IAI46_13730at 2926.527 kb on + strand, within IAI46_13730at 2926.528 kb on - strand, within IAI46_13730at 2926.573 kb on + strand, within IAI46_13730at 2926.573 kb on + strand, within IAI46_13730at 2926.574 kb on - strand, within IAI46_13730at 2926.574 kb on - strand, within IAI46_13730at 2926.627 kb on + strand, within IAI46_13730at 2926.650 kb on + strand, within IAI46_13730at 2926.664 kb on + strand, within IAI46_13730at 2926.668 kb on - strand, within IAI46_13730at 2926.684 kb on - strand, within IAI46_13730at 2926.737 kb on + strand, within IAI46_13730at 2926.738 kb on - strand, within IAI46_13730at 2926.924 kb on - strandat 2927.076 kb on + strand, within IAI46_13735at 2927.093 kb on + strandat 2927.093 kb on + strandat 2927.094 kb on - strandat 2927.148 kb on - strandat 2927.148 kb on - strandat 2927.199 kb on + strand, within IAI46_13740at 2927.368 kb on + strand, within IAI46_13740at 2927.369 kb on - strand, within IAI46_13740at 2927.392 kb on + strand, within IAI46_13740at 2927.405 kb on - strand, within IAI46_13740at 2927.405 kb on - strand, within IAI46_13740at 2927.405 kb on - strand, within IAI46_13740at 2927.413 kb on - strand, within IAI46_13740at 2927.576 kb on + strand, within IAI46_13740at 2927.597 kb on + strand, within IAI46_13740at 2927.717 kb on + strand, within IAI46_13740at 2927.799 kb on + strandat 2927.799 kb on + strandat 2927.800 kb on - strandat 2927.927 kb on + strandat 2928.005 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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2,926,144 - IAI46_13730 0.24 -1.7
2,926,166 - IAI46_13730 0.26 +1.4
2,926,273 - IAI46_13730 0.36 +0.1
2,926,527 + IAI46_13730 0.61 +1.4
2,926,528 - IAI46_13730 0.61 -0.1
2,926,573 + IAI46_13730 0.66 -0.4
2,926,573 + IAI46_13730 0.66 -1.4
2,926,574 - IAI46_13730 0.66 +0.8
2,926,574 - IAI46_13730 0.66 -0.4
2,926,627 + IAI46_13730 0.71 +1.6
2,926,650 + IAI46_13730 0.73 +0.9
2,926,664 + IAI46_13730 0.75 -0.7
2,926,668 - IAI46_13730 0.75 +0.6
2,926,684 - IAI46_13730 0.77 -0.4
2,926,737 + IAI46_13730 0.82 +0.8
2,926,738 - IAI46_13730 0.82 -0.2
2,926,924 - -2.1
2,927,076 + IAI46_13735 0.85 +0.5
2,927,093 + -0.6
2,927,093 + -0.1
2,927,094 - -0.6
2,927,148 - +0.7
2,927,148 - -1.5
2,927,199 + IAI46_13740 0.14 +0.8
2,927,368 + IAI46_13740 0.37 -1.2
2,927,369 - IAI46_13740 0.37 -1.7
2,927,392 + IAI46_13740 0.40 +0.3
2,927,405 - IAI46_13740 0.42 -0.7
2,927,405 - IAI46_13740 0.42 +0.9
2,927,405 - IAI46_13740 0.42 +0.8
2,927,413 - IAI46_13740 0.43 -0.4
2,927,576 + IAI46_13740 0.65 -1.3
2,927,597 + IAI46_13740 0.68 -0.5
2,927,717 + IAI46_13740 0.84 +0.9
2,927,799 + +0.2
2,927,799 + +0.0
2,927,800 - -0.5
2,927,927 + -0.5
2,928,005 + +0.6

Or see this region's nucleotide sequence