Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12610 and IAI46_12615 are separated by 577 nucleotides IAI46_12615 and IAI46_12620 are separated by 520 nucleotides IAI46_12620 and IAI46_12625 are separated by 71 nucleotides
IAI46_12610: IAI46_12610 - alpha/beta hydrolase, at 2,678,642 to 2,679,472
_12610
IAI46_12615: IAI46_12615 - hypothetical protein, at 2,680,050 to 2,680,562
_12615
IAI46_12620: IAI46_12620 - MerR family transcriptional regulator, at 2,681,083 to 2,681,481
_12620
IAI46_12625: IAI46_12625 - NADH:flavin oxidoreductase/NADH oxidase family protein, at 2,681,553 to 2,682,776
_12625
Position (kb)
2680
2681 Strain fitness (log2 ratio)
-2
-1
0
1 at 2679.113 kb on + strand, within IAI46_12610 at 2679.231 kb on - strand, within IAI46_12610 at 2679.533 kb on + strand at 2679.792 kb on - strand at 2679.935 kb on + strand at 2679.935 kb on + strand at 2679.936 kb on - strand at 2680.253 kb on + strand, within IAI46_12615 at 2680.326 kb on + strand, within IAI46_12615 at 2680.433 kb on + strand, within IAI46_12615 at 2680.481 kb on + strand, within IAI46_12615 at 2680.486 kb on - strand, within IAI46_12615 at 2680.513 kb on + strand at 2680.686 kb on - strand at 2680.721 kb on - strand at 2680.897 kb on + strand at 2681.128 kb on + strand, within IAI46_12620 at 2681.299 kb on - strand, within IAI46_12620 at 2681.401 kb on - strand, within IAI46_12620 at 2681.432 kb on - strand, within IAI46_12620 at 2681.432 kb on - strand, within IAI46_12620 at 2681.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 2,679,113 + IAI46_12610 0.57 -0.3 2,679,231 - IAI46_12610 0.71 +0.2 2,679,533 + +1.5 2,679,792 - -1.9 2,679,935 + -0.8 2,679,935 + +1.3 2,679,936 - +0.5 2,680,253 + IAI46_12615 0.40 -1.1 2,680,326 + IAI46_12615 0.54 +0.5 2,680,433 + IAI46_12615 0.75 +1.5 2,680,481 + IAI46_12615 0.84 -0.1 2,680,486 - IAI46_12615 0.85 -0.4 2,680,513 + -0.5 2,680,686 - -1.3 2,680,721 - +0.1 2,680,897 + +0.5 2,681,128 + IAI46_12620 0.11 -0.5 2,681,299 - IAI46_12620 0.54 +1.1 2,681,401 - IAI46_12620 0.80 -0.1 2,681,432 - IAI46_12620 0.87 -0.1 2,681,432 - IAI46_12620 0.87 -0.6 2,681,513 - -0.8
Or see this region's nucleotide sequence