Strain Fitness in Serratia liquefaciens MT49 around IAI46_11850

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11845 and IAI46_11850 are separated by 19 nucleotidesIAI46_11850 and IAI46_11855 are separated by 111 nucleotides IAI46_11845: IAI46_11845 - molybdopterin-dependent oxidoreductase, at 2,502,224 to 2,505,722 _11845 IAI46_11850: IAI46_11850 - LysR family transcriptional regulator, at 2,505,742 to 2,506,623 _11850 IAI46_11855: IAI46_11855 - sulfite exporter TauE/SafE family protein, at 2,506,735 to 2,507,481 _11855 Position (kb) 2505 2506 2507Strain fitness (log2 ratio) -2 -1 0 1at 2504.800 kb on - strand, within IAI46_11845at 2504.813 kb on + strand, within IAI46_11845at 2504.813 kb on + strand, within IAI46_11845at 2504.813 kb on + strand, within IAI46_11845at 2504.844 kb on + strand, within IAI46_11845at 2504.850 kb on + strand, within IAI46_11845at 2504.850 kb on + strand, within IAI46_11845at 2504.851 kb on - strand, within IAI46_11845at 2504.852 kb on + strand, within IAI46_11845at 2504.852 kb on + strand, within IAI46_11845at 2504.853 kb on - strand, within IAI46_11845at 2504.915 kb on + strand, within IAI46_11845at 2505.182 kb on - strand, within IAI46_11845at 2505.494 kb on + strandat 2505.494 kb on + strandat 2505.496 kb on + strandat 2505.496 kb on + strandat 2505.496 kb on + strandat 2505.497 kb on - strandat 2505.631 kb on - strandat 2505.631 kb on - strandat 2505.634 kb on + strandat 2505.646 kb on - strandat 2505.721 kb on - strandat 2505.808 kb on + strandat 2505.808 kb on + strandat 2505.809 kb on - strandat 2505.809 kb on - strandat 2505.967 kb on + strand, within IAI46_11850at 2506.045 kb on - strand, within IAI46_11850at 2506.052 kb on + strand, within IAI46_11850at 2506.053 kb on - strand, within IAI46_11850at 2506.053 kb on - strand, within IAI46_11850at 2506.053 kb on - strand, within IAI46_11850at 2506.145 kb on + strand, within IAI46_11850at 2506.280 kb on + strand, within IAI46_11850at 2506.281 kb on - strand, within IAI46_11850at 2506.402 kb on + strand, within IAI46_11850at 2506.403 kb on - strand, within IAI46_11850at 2506.634 kb on + strandat 2506.634 kb on + strandat 2506.634 kb on + strandat 2506.728 kb on + strandat 2506.728 kb on + strandat 2506.734 kb on + strandat 2506.735 kb on - strandat 2506.735 kb on - strandat 2506.735 kb on - strandat 2506.735 kb on - strandat 2506.779 kb on + strandat 2507.068 kb on + strand, within IAI46_11855at 2507.147 kb on + strand, within IAI46_11855at 2507.203 kb on + strand, within IAI46_11855

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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2,504,800 - IAI46_11845 0.74 +0.6
2,504,813 + IAI46_11845 0.74 +0.1
2,504,813 + IAI46_11845 0.74 +0.5
2,504,813 + IAI46_11845 0.74 +0.9
2,504,844 + IAI46_11845 0.75 -1.0
2,504,850 + IAI46_11845 0.75 +0.2
2,504,850 + IAI46_11845 0.75 +1.1
2,504,851 - IAI46_11845 0.75 -0.2
2,504,852 + IAI46_11845 0.75 +0.4
2,504,852 + IAI46_11845 0.75 -0.4
2,504,853 - IAI46_11845 0.75 +0.7
2,504,915 + IAI46_11845 0.77 -0.4
2,505,182 - IAI46_11845 0.85 -0.0
2,505,494 + +0.6
2,505,494 + +0.3
2,505,496 + -0.0
2,505,496 + +0.3
2,505,496 + -0.7
2,505,497 - +0.5
2,505,631 - -0.4
2,505,631 - +0.6
2,505,634 + -0.0
2,505,646 - -0.2
2,505,721 - -1.9
2,505,808 + +0.1
2,505,808 + -1.4
2,505,809 - -0.7
2,505,809 - -0.3
2,505,967 + IAI46_11850 0.26 +0.2
2,506,045 - IAI46_11850 0.34 +0.1
2,506,052 + IAI46_11850 0.35 -1.2
2,506,053 - IAI46_11850 0.35 +1.2
2,506,053 - IAI46_11850 0.35 -0.5
2,506,053 - IAI46_11850 0.35 +0.7
2,506,145 + IAI46_11850 0.46 -0.7
2,506,280 + IAI46_11850 0.61 +0.3
2,506,281 - IAI46_11850 0.61 -1.4
2,506,402 + IAI46_11850 0.75 -0.7
2,506,403 - IAI46_11850 0.75 -0.2
2,506,634 + +1.2
2,506,634 + -0.6
2,506,634 + +0.1
2,506,728 + +0.5
2,506,728 + +1.2
2,506,734 + +0.3
2,506,735 - -1.6
2,506,735 - -1.2
2,506,735 - +0.8
2,506,735 - +0.3
2,506,779 + +1.3
2,507,068 + IAI46_11855 0.45 +0.7
2,507,147 + IAI46_11855 0.55 +0.8
2,507,203 + IAI46_11855 0.63 -0.5

Or see this region's nucleotide sequence