Strain Fitness in Serratia liquefaciens MT49 around IAI46_11260

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11255 and IAI46_11260 are separated by 415 nucleotidesIAI46_11260 and IAI46_11265 are separated by 70 nucleotidesIAI46_11265 and IAI46_11270 are separated by 79 nucleotides IAI46_11255: IAI46_11255 - C40 family peptidase, at 2,376,129 to 2,376,947 _11255 IAI46_11260: IAI46_11260 - Grx4 family monothiol glutaredoxin, at 2,377,363 to 2,377,710 _11260 IAI46_11265: IAI46_11265 - ribonuclease T, at 2,377,781 to 2,378,461 _11265 IAI46_11270: IAI46_11270 - lactoylglutathione lyase, at 2,378,541 to 2,378,948 _11270 Position (kb) 2377 2378Strain fitness (log2 ratio) -2 -1 0 1 2at 2376.414 kb on - strand, within IAI46_11255at 2376.415 kb on + strand, within IAI46_11255at 2376.415 kb on + strand, within IAI46_11255at 2376.415 kb on + strand, within IAI46_11255at 2376.422 kb on - strand, within IAI46_11255at 2376.425 kb on - strand, within IAI46_11255at 2376.425 kb on - strand, within IAI46_11255at 2376.464 kb on + strand, within IAI46_11255at 2376.479 kb on - strand, within IAI46_11255at 2376.903 kb on + strandat 2376.933 kb on - strandat 2376.956 kb on + strandat 2377.018 kb on - strandat 2377.018 kb on - strandat 2377.165 kb on + strandat 2377.165 kb on + strandat 2377.330 kb on + strandat 2377.359 kb on + strandat 2377.359 kb on + strandat 2377.410 kb on + strand, within IAI46_11260at 2377.515 kb on + strand, within IAI46_11260at 2377.633 kb on + strand, within IAI46_11260at 2377.709 kb on - strandat 2377.723 kb on + strandat 2377.756 kb on + strandat 2377.757 kb on - strandat 2377.876 kb on - strand, within IAI46_11265at 2378.009 kb on - strand, within IAI46_11265at 2378.190 kb on - strand, within IAI46_11265at 2378.303 kb on - strand, within IAI46_11265at 2378.363 kb on + strand, within IAI46_11265at 2378.364 kb on - strand, within IAI46_11265at 2378.364 kb on - strand, within IAI46_11265at 2378.660 kb on + strand, within IAI46_11270at 2378.660 kb on + strand, within IAI46_11270

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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2,376,414 - IAI46_11255 0.35 +0.4
2,376,415 + IAI46_11255 0.35 -0.9
2,376,415 + IAI46_11255 0.35 -1.2
2,376,415 + IAI46_11255 0.35 -0.2
2,376,422 - IAI46_11255 0.36 +0.1
2,376,425 - IAI46_11255 0.36 +0.9
2,376,425 - IAI46_11255 0.36 +1.9
2,376,464 + IAI46_11255 0.41 -0.2
2,376,479 - IAI46_11255 0.43 -0.4
2,376,903 + -0.7
2,376,933 - -2.1
2,376,956 + +0.5
2,377,018 - +0.0
2,377,018 - -1.1
2,377,165 + +0.8
2,377,165 + -0.2
2,377,330 + -1.3
2,377,359 + -1.0
2,377,359 + +0.4
2,377,410 + IAI46_11260 0.14 -0.5
2,377,515 + IAI46_11260 0.44 -2.4
2,377,633 + IAI46_11260 0.78 +1.1
2,377,709 - +0.9
2,377,723 + +0.3
2,377,756 + -2.3
2,377,757 - -0.1
2,377,876 - IAI46_11265 0.14 -1.0
2,378,009 - IAI46_11265 0.33 -0.8
2,378,190 - IAI46_11265 0.60 +1.2
2,378,303 - IAI46_11265 0.77 +0.6
2,378,363 + IAI46_11265 0.85 +0.3
2,378,364 - IAI46_11265 0.86 +1.6
2,378,364 - IAI46_11265 0.86 +0.6
2,378,660 + IAI46_11270 0.29 -0.8
2,378,660 + IAI46_11270 0.29 +1.8

Or see this region's nucleotide sequence