Strain Fitness in Serratia liquefaciens MT49 around IAI46_08065

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08060 and IAI46_08065 overlap by 4 nucleotidesIAI46_08065 and IAI46_08070 are separated by 77 nucleotides IAI46_08060: IAI46_08060 - glycosyltransferase family 4 protein, at 1,707,507 to 1,708,565 _08060 IAI46_08065: IAI46_08065 - glycosyltransferase, at 1,708,562 to 1,709,626 _08065 IAI46_08070: IAI46_08070 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 1,709,704 to 1,711,131 _08070 Position (kb) 1708 1709 1710Strain fitness (log2 ratio) -2 -1 0 1 2at 1707.762 kb on - strand, within IAI46_08060at 1708.288 kb on + strand, within IAI46_08060at 1708.346 kb on - strand, within IAI46_08060at 1708.682 kb on + strand, within IAI46_08065at 1708.683 kb on - strand, within IAI46_08065at 1708.856 kb on - strand, within IAI46_08065at 1709.110 kb on + strand, within IAI46_08065at 1709.225 kb on - strand, within IAI46_08065at 1709.245 kb on - strand, within IAI46_08065at 1709.281 kb on - strand, within IAI46_08065at 1709.286 kb on - strand, within IAI46_08065at 1709.407 kb on - strand, within IAI46_08065at 1709.462 kb on - strand, within IAI46_08065at 1709.462 kb on - strand, within IAI46_08065at 1709.509 kb on - strand, within IAI46_08065at 1709.737 kb on - strandat 1709.805 kb on - strandat 1709.861 kb on + strand, within IAI46_08070at 1709.861 kb on + strand, within IAI46_08070at 1709.949 kb on + strand, within IAI46_08070at 1709.949 kb on + strand, within IAI46_08070at 1709.952 kb on + strand, within IAI46_08070at 1710.039 kb on + strand, within IAI46_08070at 1710.039 kb on + strand, within IAI46_08070at 1710.048 kb on - strand, within IAI46_08070at 1710.130 kb on - strand, within IAI46_08070at 1710.135 kb on - strand, within IAI46_08070at 1710.152 kb on + strand, within IAI46_08070at 1710.181 kb on + strand, within IAI46_08070at 1710.183 kb on + strand, within IAI46_08070at 1710.198 kb on + strand, within IAI46_08070at 1710.198 kb on + strand, within IAI46_08070at 1710.289 kb on + strand, within IAI46_08070at 1710.289 kb on + strand, within IAI46_08070at 1710.290 kb on - strand, within IAI46_08070at 1710.306 kb on + strand, within IAI46_08070at 1710.306 kb on + strand, within IAI46_08070at 1710.306 kb on + strand, within IAI46_08070at 1710.575 kb on + strand, within IAI46_08070at 1710.621 kb on + strand, within IAI46_08070at 1710.622 kb on - strand, within IAI46_08070at 1710.624 kb on + strand, within IAI46_08070at 1710.624 kb on + strand, within IAI46_08070at 1710.625 kb on - strand, within IAI46_08070at 1710.625 kb on - strand, within IAI46_08070at 1710.625 kb on - strand, within IAI46_08070

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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1,707,762 - IAI46_08060 0.24 +1.4
1,708,288 + IAI46_08060 0.74 -0.3
1,708,346 - IAI46_08060 0.79 -1.3
1,708,682 + IAI46_08065 0.11 -0.4
1,708,683 - IAI46_08065 0.11 +1.5
1,708,856 - IAI46_08065 0.28 +0.4
1,709,110 + IAI46_08065 0.51 +0.6
1,709,225 - IAI46_08065 0.62 +1.1
1,709,245 - IAI46_08065 0.64 -0.7
1,709,281 - IAI46_08065 0.68 +0.1
1,709,286 - IAI46_08065 0.68 -1.1
1,709,407 - IAI46_08065 0.79 -0.1
1,709,462 - IAI46_08065 0.85 -0.2
1,709,462 - IAI46_08065 0.85 +1.9
1,709,509 - IAI46_08065 0.89 -0.1
1,709,737 - -2.0
1,709,805 - -0.1
1,709,861 + IAI46_08070 0.11 +1.1
1,709,861 + IAI46_08070 0.11 -0.3
1,709,949 + IAI46_08070 0.17 +0.3
1,709,949 + IAI46_08070 0.17 +1.0
1,709,952 + IAI46_08070 0.17 -0.3
1,710,039 + IAI46_08070 0.23 -0.6
1,710,039 + IAI46_08070 0.23 +1.0
1,710,048 - IAI46_08070 0.24 +0.3
1,710,130 - IAI46_08070 0.30 +0.9
1,710,135 - IAI46_08070 0.30 +0.1
1,710,152 + IAI46_08070 0.31 +1.9
1,710,181 + IAI46_08070 0.33 -0.4
1,710,183 + IAI46_08070 0.34 +1.3
1,710,198 + IAI46_08070 0.35 +0.4
1,710,198 + IAI46_08070 0.35 +1.0
1,710,289 + IAI46_08070 0.41 +0.7
1,710,289 + IAI46_08070 0.41 +0.9
1,710,290 - IAI46_08070 0.41 -0.1
1,710,306 + IAI46_08070 0.42 +0.0
1,710,306 + IAI46_08070 0.42 -0.9
1,710,306 + IAI46_08070 0.42 -0.1
1,710,575 + IAI46_08070 0.61 +0.0
1,710,621 + IAI46_08070 0.64 -1.4
1,710,622 - IAI46_08070 0.64 -0.6
1,710,624 + IAI46_08070 0.64 +0.4
1,710,624 + IAI46_08070 0.64 -0.4
1,710,625 - IAI46_08070 0.64 -0.7
1,710,625 - IAI46_08070 0.64 -0.1
1,710,625 - IAI46_08070 0.64 +0.7

Or see this region's nucleotide sequence