Strain Fitness in Serratia liquefaciens MT49 around IAI46_08055

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08050 and IAI46_08055 are separated by 2 nucleotidesIAI46_08055 and IAI46_08060 are separated by 32 nucleotides IAI46_08050: IAI46_08050 - glycosyltransferase family 4 protein, at 1,705,001 to 1,706,137 _08050 IAI46_08055: IAI46_08055 - hypothetical protein, at 1,706,140 to 1,707,474 _08055 IAI46_08060: IAI46_08060 - glycosyltransferase family 4 protein, at 1,707,507 to 1,708,565 _08060 Position (kb) 1706 1707 1708Strain fitness (log2 ratio) -2 -1 0 1at 1705.175 kb on + strand, within IAI46_08050at 1705.288 kb on + strand, within IAI46_08050at 1705.288 kb on + strand, within IAI46_08050at 1705.360 kb on - strand, within IAI46_08050at 1705.467 kb on + strand, within IAI46_08050at 1705.468 kb on - strand, within IAI46_08050at 1705.468 kb on - strand, within IAI46_08050at 1705.487 kb on - strand, within IAI46_08050at 1705.563 kb on + strand, within IAI46_08050at 1705.601 kb on - strand, within IAI46_08050at 1705.601 kb on - strand, within IAI46_08050at 1705.601 kb on - strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.604 kb on + strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.605 kb on - strand, within IAI46_08050at 1705.606 kb on + strand, within IAI46_08050at 1705.610 kb on + strand, within IAI46_08050at 1705.610 kb on + strand, within IAI46_08050at 1705.610 kb on + strand, within IAI46_08050at 1705.610 kb on + strand, within IAI46_08050at 1705.611 kb on - strand, within IAI46_08050at 1705.660 kb on - strand, within IAI46_08050at 1705.777 kb on + strand, within IAI46_08050at 1705.778 kb on - strand, within IAI46_08050at 1705.956 kb on - strand, within IAI46_08050at 1705.957 kb on + strand, within IAI46_08050at 1705.958 kb on - strand, within IAI46_08050at 1705.961 kb on - strand, within IAI46_08050at 1705.997 kb on + strand, within IAI46_08050at 1706.003 kb on - strand, within IAI46_08050at 1706.068 kb on + strandat 1706.114 kb on + strandat 1706.185 kb on + strandat 1706.186 kb on - strandat 1706.404 kb on - strand, within IAI46_08055at 1706.881 kb on - strand, within IAI46_08055at 1707.762 kb on - strand, within IAI46_08060at 1708.288 kb on + strand, within IAI46_08060at 1708.346 kb on - strand, within IAI46_08060

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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1,705,175 + IAI46_08050 0.15 +1.6
1,705,288 + IAI46_08050 0.25 +0.9
1,705,288 + IAI46_08050 0.25 -1.7
1,705,360 - IAI46_08050 0.32 -0.1
1,705,467 + IAI46_08050 0.41 -0.4
1,705,468 - IAI46_08050 0.41 -0.1
1,705,468 - IAI46_08050 0.41 +0.3
1,705,487 - IAI46_08050 0.43 -2.7
1,705,563 + IAI46_08050 0.49 +1.0
1,705,601 - IAI46_08050 0.53 -1.6
1,705,601 - IAI46_08050 0.53 -1.8
1,705,601 - IAI46_08050 0.53 +1.3
1,705,604 + IAI46_08050 0.53 -1.4
1,705,604 + IAI46_08050 0.53 -0.4
1,705,604 + IAI46_08050 0.53 +1.0
1,705,604 + IAI46_08050 0.53 +1.5
1,705,604 + IAI46_08050 0.53 +0.6
1,705,604 + IAI46_08050 0.53 -0.4
1,705,604 + IAI46_08050 0.53 +0.8
1,705,604 + IAI46_08050 0.53 -0.1
1,705,605 - IAI46_08050 0.53 +0.3
1,705,605 - IAI46_08050 0.53 -0.4
1,705,605 - IAI46_08050 0.53 -0.1
1,705,605 - IAI46_08050 0.53 +0.3
1,705,605 - IAI46_08050 0.53 -0.8
1,705,606 + IAI46_08050 0.53 +0.2
1,705,610 + IAI46_08050 0.54 +0.2
1,705,610 + IAI46_08050 0.54 +0.7
1,705,610 + IAI46_08050 0.54 -1.4
1,705,610 + IAI46_08050 0.54 -0.2
1,705,611 - IAI46_08050 0.54 +0.3
1,705,660 - IAI46_08050 0.58 +1.4
1,705,777 + IAI46_08050 0.68 +1.1
1,705,778 - IAI46_08050 0.68 +0.5
1,705,956 - IAI46_08050 0.84 -0.1
1,705,957 + IAI46_08050 0.84 +0.4
1,705,958 - IAI46_08050 0.84 -0.3
1,705,961 - IAI46_08050 0.84 -0.7
1,705,997 + IAI46_08050 0.88 +1.6
1,706,003 - IAI46_08050 0.88 -0.1
1,706,068 + +1.5
1,706,114 + -1.1
1,706,185 + +1.5
1,706,186 - -0.7
1,706,404 - IAI46_08055 0.20 -0.7
1,706,881 - IAI46_08055 0.56 +0.0
1,707,762 - IAI46_08060 0.24 +1.4
1,708,288 + IAI46_08060 0.74 -0.3
1,708,346 - IAI46_08060 0.79 -1.3

Or see this region's nucleotide sequence