Strain Fitness in Serratia liquefaciens MT49 around IAI46_04410

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04405 and IAI46_04410 are separated by 78 nucleotidesIAI46_04410 and IAI46_04415 are separated by 324 nucleotidesIAI46_04415 and IAI46_04420 are separated by 144 nucleotides IAI46_04405: IAI46_04405 - DNA polymerase IV, at 942,414 to 943,475 _04405 IAI46_04410: IAI46_04410 - beta-Ala-His dipeptidase, at 943,554 to 945,014 _04410 IAI46_04415: IAI46_04415 - xanthine phosphoribosyltransferase, at 945,339 to 945,797 _04415 IAI46_04420: IAI46_04420 - esterase FrsA, at 945,942 to 947,189 _04420 Position (kb) 943 944 945 946Strain fitness (log2 ratio) -2 -1 0 1at 942.621 kb on - strand, within IAI46_04405at 942.648 kb on + strand, within IAI46_04405at 942.669 kb on - strand, within IAI46_04405at 942.730 kb on - strand, within IAI46_04405at 942.882 kb on - strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.898 kb on - strand, within IAI46_04405at 942.902 kb on + strand, within IAI46_04405at 942.902 kb on + strand, within IAI46_04405at 942.905 kb on + strand, within IAI46_04405at 942.905 kb on + strand, within IAI46_04405at 942.906 kb on - strand, within IAI46_04405at 943.049 kb on - strand, within IAI46_04405at 943.049 kb on - strand, within IAI46_04405at 943.075 kb on + strand, within IAI46_04405at 943.075 kb on + strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405at 943.216 kb on - strand, within IAI46_04405at 943.246 kb on + strand, within IAI46_04405at 943.280 kb on - strand, within IAI46_04405at 943.340 kb on + strand, within IAI46_04405at 943.360 kb on + strand, within IAI46_04405at 943.361 kb on - strand, within IAI46_04405at 943.361 kb on - strand, within IAI46_04405at 943.361 kb on - strand, within IAI46_04405at 943.412 kb on - strandat 943.445 kb on - strandat 943.462 kb on + strandat 943.462 kb on + strandat 943.463 kb on - strandat 943.474 kb on - strandat 943.493 kb on - strandat 943.536 kb on + strandat 943.536 kb on + strandat 943.537 kb on - strandat 943.555 kb on + strandat 943.604 kb on - strandat 943.679 kb on + strandat 943.680 kb on - strandat 943.771 kb on + strand, within IAI46_04410at 943.894 kb on + strand, within IAI46_04410at 943.965 kb on + strand, within IAI46_04410at 943.966 kb on - strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.486 kb on - strand, within IAI46_04410at 944.719 kb on + strand, within IAI46_04410at 944.719 kb on + strand, within IAI46_04410at 944.719 kb on + strand, within IAI46_04410at 944.720 kb on - strand, within IAI46_04410at 944.936 kb on - strandat 944.951 kb on + strandat 944.952 kb on - strandat 944.952 kb on - strandat 945.017 kb on + strandat 945.017 kb on + strandat 945.110 kb on + strandat 945.170 kb on + strandat 945.171 kb on - strandat 945.220 kb on + strandat 945.238 kb on + strandat 945.267 kb on + strandat 945.298 kb on + strandat 945.298 kb on + strandat 945.299 kb on - strandat 945.306 kb on - strandat 945.306 kb on - strandat 945.338 kb on + strandat 945.338 kb on + strandat 945.339 kb on - strandat 945.415 kb on + strand, within IAI46_04415at 945.511 kb on + strand, within IAI46_04415at 945.511 kb on + strand, within IAI46_04415at 945.512 kb on - strand, within IAI46_04415at 945.525 kb on + strand, within IAI46_04415at 945.526 kb on - strand, within IAI46_04415at 945.526 kb on - strand, within IAI46_04415at 945.526 kb on - strand, within IAI46_04415at 945.624 kb on - strand, within IAI46_04415at 945.648 kb on + strand, within IAI46_04415at 945.649 kb on - strand, within IAI46_04415at 945.649 kb on - strand, within IAI46_04415at 945.649 kb on - strand, within IAI46_04415at 945.712 kb on - strand, within IAI46_04415at 945.818 kb on - strandat 945.849 kb on - strandat 945.872 kb on + strandat 945.876 kb on + strandat 945.876 kb on + strandat 945.877 kb on - strandat 945.877 kb on - strandat 945.877 kb on - strandat 945.881 kb on + strandat 945.882 kb on - strandat 945.882 kb on - strandat 945.882 kb on - strandat 945.896 kb on - strandat 945.911 kb on + strandat 945.911 kb on + strandat 945.912 kb on - strandat 945.912 kb on - strandat 945.923 kb on + strandat 945.924 kb on - strandat 945.986 kb on + strandat 945.986 kb on + strandat 945.987 kb on - strandat 945.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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942,621 - IAI46_04405 0.19 +0.1
942,648 + IAI46_04405 0.22 +0.1
942,669 - IAI46_04405 0.24 -0.6
942,730 - IAI46_04405 0.30 +0.9
942,882 - IAI46_04405 0.44 +1.0
942,897 + IAI46_04405 0.45 +0.5
942,897 + IAI46_04405 0.45 -0.9
942,897 + IAI46_04405 0.45 -1.4
942,898 - IAI46_04405 0.46 +0.3
942,902 + IAI46_04405 0.46 -0.9
942,902 + IAI46_04405 0.46 +1.2
942,905 + IAI46_04405 0.46 -1.1
942,905 + IAI46_04405 0.46 -0.4
942,906 - IAI46_04405 0.46 +0.2
943,049 - IAI46_04405 0.60 +1.2
943,049 - IAI46_04405 0.60 -0.1
943,075 + IAI46_04405 0.62 -0.4
943,075 + IAI46_04405 0.62 +1.1
943,148 - IAI46_04405 0.69 -1.1
943,148 - IAI46_04405 0.69 -0.5
943,148 - IAI46_04405 0.69 +1.1
943,216 - IAI46_04405 0.76 +0.1
943,246 + IAI46_04405 0.78 -0.2
943,280 - IAI46_04405 0.82 +0.5
943,340 + IAI46_04405 0.87 -0.5
943,360 + IAI46_04405 0.89 -0.0
943,361 - IAI46_04405 0.89 -0.4
943,361 - IAI46_04405 0.89 -0.8
943,361 - IAI46_04405 0.89 -0.2
943,412 - +0.6
943,445 - +0.3
943,462 + -0.3
943,462 + +0.0
943,463 - -0.2
943,474 - +0.4
943,493 - +0.7
943,536 + +0.2
943,536 + -0.5
943,537 - +0.1
943,555 + +0.1
943,604 - +0.6
943,679 + -0.3
943,680 - +0.2
943,771 + IAI46_04410 0.15 -1.0
943,894 + IAI46_04410 0.23 -0.1
943,965 + IAI46_04410 0.28 +1.1
943,966 - IAI46_04410 0.28 +0.5
944,485 + IAI46_04410 0.64 +0.6
944,485 + IAI46_04410 0.64 +0.4
944,485 + IAI46_04410 0.64 -0.5
944,485 + IAI46_04410 0.64 +1.5
944,485 + IAI46_04410 0.64 +0.0
944,486 - IAI46_04410 0.64 -1.2
944,719 + IAI46_04410 0.80 -2.0
944,719 + IAI46_04410 0.80 +0.2
944,719 + IAI46_04410 0.80 -0.3
944,720 - IAI46_04410 0.80 -1.4
944,936 - -0.5
944,951 + -0.1
944,952 - -1.4
944,952 - +0.5
945,017 + +0.3
945,017 + -1.2
945,110 + -0.1
945,170 + -0.3
945,171 - -0.1
945,220 + +0.7
945,238 + -0.2
945,267 + -0.4
945,298 + -0.7
945,298 + +0.5
945,299 - -0.3
945,306 - +0.4
945,306 - -0.7
945,338 + +0.0
945,338 + -0.6
945,339 - -1.4
945,415 + IAI46_04415 0.17 -0.7
945,511 + IAI46_04415 0.37 -0.4
945,511 + IAI46_04415 0.37 -0.9
945,512 - IAI46_04415 0.38 -1.4
945,525 + IAI46_04415 0.41 +0.4
945,526 - IAI46_04415 0.41 -0.3
945,526 - IAI46_04415 0.41 +0.5
945,526 - IAI46_04415 0.41 -0.3
945,624 - IAI46_04415 0.62 +0.2
945,648 + IAI46_04415 0.67 -0.1
945,649 - IAI46_04415 0.68 -0.2
945,649 - IAI46_04415 0.68 +0.9
945,649 - IAI46_04415 0.68 -1.5
945,712 - IAI46_04415 0.81 +0.2
945,818 - +0.3
945,849 - -0.7
945,872 + +1.2
945,876 + -0.2
945,876 + -0.1
945,877 - +0.1
945,877 - +0.3
945,877 - -0.7
945,881 + -1.3
945,882 - -1.3
945,882 - -0.2
945,882 - +1.1
945,896 - -0.3
945,911 + -0.2
945,911 + +0.1
945,912 - -0.3
945,912 - -0.5
945,923 + +0.6
945,924 - +0.3
945,986 + -0.0
945,986 + +1.0
945,987 - -1.6
945,987 - +0.8

Or see this region's nucleotide sequence