Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03605 and IAI46_03610 are separated by 375 nucleotides IAI46_03610 and IAI46_03615 are separated by 81 nucleotides
IAI46_03605: IAI46_03605 - nucleoside triphosphate pyrophosphohydrolase, at 783,119 to 783,913
_03605
IAI46_03610: IAI46_03610 - CTP synthase (glutamine hydrolyzing), at 784,289 to 785,926
_03610
IAI46_03615: IAI46_03615 - phosphopyruvate hydratase, at 786,008 to 787,303
_03615
Position (kb) 784
785
786 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 783.332 kb on + strand, within IAI46_03605 at 783.332 kb on + strand, within IAI46_03605 at 783.333 kb on - strand, within IAI46_03605 at 783.333 kb on - strand, within IAI46_03605 at 783.382 kb on + strand, within IAI46_03605 at 783.382 kb on + strand, within IAI46_03605 at 783.607 kb on + strand, within IAI46_03605 at 783.607 kb on + strand, within IAI46_03605 at 783.607 kb on + strand, within IAI46_03605 at 783.608 kb on - strand, within IAI46_03605 at 783.608 kb on - strand, within IAI46_03605 at 783.608 kb on - strand, within IAI46_03605 at 783.635 kb on + strand, within IAI46_03605 at 783.635 kb on + strand, within IAI46_03605 at 783.636 kb on - strand, within IAI46_03605 at 783.636 kb on - strand, within IAI46_03605 at 783.757 kb on + strand, within IAI46_03605 at 783.758 kb on - strand, within IAI46_03605 at 783.817 kb on - strand, within IAI46_03605 at 783.817 kb on - strand, within IAI46_03605 at 783.826 kb on + strand, within IAI46_03605 at 783.826 kb on + strand, within IAI46_03605 at 783.827 kb on - strand, within IAI46_03605 at 783.912 kb on - strand at 783.932 kb on + strand at 783.932 kb on + strand at 783.947 kb on - strand at 783.952 kb on - strand at 783.952 kb on - strand at 784.006 kb on + strand at 784.006 kb on + strand at 784.194 kb on + strand at 784.195 kb on - strand at 785.924 kb on + strand at 785.924 kb on + strand at 785.980 kb on + strand at 785.980 kb on + strand at 785.985 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 783,332 + IAI46_03605 0.27 +1.1 783,332 + IAI46_03605 0.27 +0.6 783,333 - IAI46_03605 0.27 +0.4 783,333 - IAI46_03605 0.27 +0.4 783,382 + IAI46_03605 0.33 +0.4 783,382 + IAI46_03605 0.33 +0.1 783,607 + IAI46_03605 0.61 +1.1 783,607 + IAI46_03605 0.61 +0.6 783,607 + IAI46_03605 0.61 -0.2 783,608 - IAI46_03605 0.62 -0.2 783,608 - IAI46_03605 0.62 -0.5 783,608 - IAI46_03605 0.62 -0.4 783,635 + IAI46_03605 0.65 +0.9 783,635 + IAI46_03605 0.65 +0.2 783,636 - IAI46_03605 0.65 +0.0 783,636 - IAI46_03605 0.65 +0.4 783,757 + IAI46_03605 0.80 -0.4 783,758 - IAI46_03605 0.80 +1.5 783,817 - IAI46_03605 0.88 +1.1 783,817 - IAI46_03605 0.88 -0.4 783,826 + IAI46_03605 0.89 -0.3 783,826 + IAI46_03605 0.89 -0.7 783,827 - IAI46_03605 0.89 -0.5 783,912 - +0.0 783,932 + -0.4 783,932 + +0.2 783,947 - +0.7 783,952 - +0.6 783,952 - -0.1 784,006 + -0.7 784,006 + -0.1 784,194 + -0.1 784,195 - +0.6 785,924 + +0.1 785,924 + -0.2 785,980 + +0.6 785,980 + -3.5 785,985 + -0.1
Or see this region's nucleotide sequence