Strain Fitness in Serratia liquefaciens MT49 around IAI46_03170

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03165 and IAI46_03170 are separated by 73 nucleotidesIAI46_03170 and IAI46_03175 overlap by 4 nucleotidesIAI46_03175 and IAI46_03180 are separated by 100 nucleotides IAI46_03165: IAI46_03165 - sugar porter family MFS transporter, at 678,257 to 679,687 _03165 IAI46_03170: IAI46_03170 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 679,761 to 680,408 _03170 IAI46_03175: IAI46_03175 - 2-dehydro-3-deoxygalactonokinase, at 680,405 to 681,307 _03175 IAI46_03180: IAI46_03180 - FadR family transcriptional regulator, at 681,408 to 682,139 _03180 Position (kb) 679 680 681Strain fitness (log2 ratio) -3 -2 -1 0 1at 678.775 kb on + strand, within IAI46_03165at 678.806 kb on + strand, within IAI46_03165at 678.874 kb on - strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.877 kb on - strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.934 kb on - strand, within IAI46_03165at 679.049 kb on + strand, within IAI46_03165at 679.127 kb on + strand, within IAI46_03165at 679.128 kb on - strand, within IAI46_03165at 679.128 kb on - strand, within IAI46_03165at 679.136 kb on - strand, within IAI46_03165at 679.140 kb on - strand, within IAI46_03165at 679.140 kb on - strand, within IAI46_03165at 679.241 kb on - strand, within IAI46_03165at 679.305 kb on + strand, within IAI46_03165at 679.305 kb on + strand, within IAI46_03165at 679.305 kb on + strand, within IAI46_03165at 679.305 kb on + strand, within IAI46_03165at 679.306 kb on - strand, within IAI46_03165at 679.328 kb on + strand, within IAI46_03165at 679.328 kb on + strand, within IAI46_03165at 679.328 kb on + strand, within IAI46_03165at 679.328 kb on + strand, within IAI46_03165at 679.468 kb on + strand, within IAI46_03165at 679.469 kb on - strand, within IAI46_03165at 679.469 kb on - strand, within IAI46_03165at 679.549 kb on + strandat 679.681 kb on + strandat 679.728 kb on - strandat 679.758 kb on + strandat 679.758 kb on + strandat 679.758 kb on + strandat 679.758 kb on + strandat 679.758 kb on + strandat 679.759 kb on - strandat 679.759 kb on - strandat 679.762 kb on + strandat 679.812 kb on + strandat 679.812 kb on + strandat 679.813 kb on - strandat 679.813 kb on - strandat 679.813 kb on - strandat 679.840 kb on + strand, within IAI46_03170at 679.840 kb on + strand, within IAI46_03170at 679.841 kb on - strand, within IAI46_03170at 679.883 kb on + strand, within IAI46_03170at 679.885 kb on + strand, within IAI46_03170at 679.885 kb on + strand, within IAI46_03170at 679.885 kb on + strand, within IAI46_03170at 679.885 kb on + strand, within IAI46_03170at 679.886 kb on - strand, within IAI46_03170at 679.886 kb on - strand, within IAI46_03170at 679.986 kb on - strand, within IAI46_03170at 679.989 kb on - strand, within IAI46_03170at 679.989 kb on - strand, within IAI46_03170at 680.132 kb on + strand, within IAI46_03170at 680.132 kb on + strand, within IAI46_03170at 680.261 kb on + strand, within IAI46_03170at 680.261 kb on + strand, within IAI46_03170at 680.261 kb on + strand, within IAI46_03170at 680.261 kb on + strand, within IAI46_03170at 680.262 kb on - strand, within IAI46_03170at 680.262 kb on - strand, within IAI46_03170at 680.262 kb on - strand, within IAI46_03170at 680.264 kb on + strand, within IAI46_03170at 680.264 kb on + strand, within IAI46_03170at 680.265 kb on - strand, within IAI46_03170at 680.423 kb on + strandat 680.424 kb on - strandat 680.433 kb on + strandat 680.434 kb on - strandat 680.456 kb on - strandat 680.464 kb on + strandat 680.465 kb on - strandat 680.611 kb on - strand, within IAI46_03175at 680.611 kb on - strand, within IAI46_03175at 680.611 kb on - strand, within IAI46_03175at 680.618 kb on + strand, within IAI46_03175at 680.619 kb on - strand, within IAI46_03175at 680.620 kb on + strand, within IAI46_03175at 680.621 kb on - strand, within IAI46_03175at 680.656 kb on + strand, within IAI46_03175at 680.657 kb on - strand, within IAI46_03175at 680.807 kb on - strand, within IAI46_03175at 680.807 kb on - strand, within IAI46_03175at 681.065 kb on + strand, within IAI46_03175at 681.065 kb on + strand, within IAI46_03175at 681.066 kb on - strand, within IAI46_03175at 681.066 kb on - strand, within IAI46_03175at 681.069 kb on + strand, within IAI46_03175at 681.069 kb on + strand, within IAI46_03175at 681.069 kb on + strand, within IAI46_03175at 681.070 kb on - strand, within IAI46_03175at 681.070 kb on - strand, within IAI46_03175at 681.143 kb on + strand, within IAI46_03175at 681.143 kb on + strand, within IAI46_03175at 681.158 kb on + strand, within IAI46_03175at 681.158 kb on + strand, within IAI46_03175at 681.159 kb on - strand, within IAI46_03175at 681.159 kb on - strand, within IAI46_03175at 681.159 kb on - strand, within IAI46_03175at 681.159 kb on - strand, within IAI46_03175at 681.163 kb on + strand, within IAI46_03175at 681.226 kb on + strandat 681.226 kb on + strandat 681.227 kb on - strandat 681.231 kb on - strandat 681.231 kb on - strandat 681.251 kb on + strandat 681.251 kb on + strandat 681.252 kb on - strandat 681.252 kb on - strandat 681.268 kb on + strandat 681.268 kb on + strandat 681.269 kb on - strandat 681.269 kb on - strandat 681.269 kb on - strandat 681.286 kb on + strandat 681.301 kb on + strandat 681.350 kb on - strandat 681.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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678,775 + IAI46_03165 0.36 -0.8
678,806 + IAI46_03165 0.38 +0.2
678,874 - IAI46_03165 0.43 -1.4
678,876 + IAI46_03165 0.43 -0.0
678,876 + IAI46_03165 0.43 +1.1
678,876 + IAI46_03165 0.43 +0.3
678,877 - IAI46_03165 0.43 -0.8
678,910 + IAI46_03165 0.46 -0.4
678,910 + IAI46_03165 0.46 +0.9
678,910 + IAI46_03165 0.46 +0.3
678,934 - IAI46_03165 0.47 -0.1
679,049 + IAI46_03165 0.55 +0.4
679,127 + IAI46_03165 0.61 -0.2
679,128 - IAI46_03165 0.61 +0.4
679,128 - IAI46_03165 0.61 +0.8
679,136 - IAI46_03165 0.61 -0.6
679,140 - IAI46_03165 0.62 -0.3
679,140 - IAI46_03165 0.62 +0.8
679,241 - IAI46_03165 0.69 +0.5
679,305 + IAI46_03165 0.73 -0.3
679,305 + IAI46_03165 0.73 -0.5
679,305 + IAI46_03165 0.73 +0.5
679,305 + IAI46_03165 0.73 +0.7
679,306 - IAI46_03165 0.73 +1.0
679,328 + IAI46_03165 0.75 -0.5
679,328 + IAI46_03165 0.75 -0.8
679,328 + IAI46_03165 0.75 -0.4
679,328 + IAI46_03165 0.75 +0.4
679,468 + IAI46_03165 0.85 -1.3
679,469 - IAI46_03165 0.85 +0.2
679,469 - IAI46_03165 0.85 +1.3
679,549 + +1.2
679,681 + +1.2
679,728 - -1.0
679,758 + -0.2
679,758 + -0.4
679,758 + +0.5
679,758 + +0.3
679,758 + -0.4
679,759 - -0.7
679,759 - +0.4
679,762 + +0.2
679,812 + +1.4
679,812 + -0.1
679,813 - -0.4
679,813 - +1.5
679,813 - +0.6
679,840 + IAI46_03170 0.12 -0.2
679,840 + IAI46_03170 0.12 +0.1
679,841 - IAI46_03170 0.12 -2.4
679,883 + IAI46_03170 0.19 -0.2
679,885 + IAI46_03170 0.19 -0.0
679,885 + IAI46_03170 0.19 -0.0
679,885 + IAI46_03170 0.19 +0.5
679,885 + IAI46_03170 0.19 +0.8
679,886 - IAI46_03170 0.19 -1.2
679,886 - IAI46_03170 0.19 -0.6
679,986 - IAI46_03170 0.35 -1.6
679,989 - IAI46_03170 0.35 -0.4
679,989 - IAI46_03170 0.35 +0.3
680,132 + IAI46_03170 0.57 +0.5
680,132 + IAI46_03170 0.57 -0.4
680,261 + IAI46_03170 0.77 -0.3
680,261 + IAI46_03170 0.77 +0.6
680,261 + IAI46_03170 0.77 -0.9
680,261 + IAI46_03170 0.77 +0.0
680,262 - IAI46_03170 0.77 +0.2
680,262 - IAI46_03170 0.77 -0.5
680,262 - IAI46_03170 0.77 -0.1
680,264 + IAI46_03170 0.78 +0.2
680,264 + IAI46_03170 0.78 -0.1
680,265 - IAI46_03170 0.78 +0.5
680,423 + -0.2
680,424 - -0.2
680,433 + -1.2
680,434 - -0.2
680,456 - +0.8
680,464 + +0.3
680,465 - +1.4
680,611 - IAI46_03175 0.23 -0.5
680,611 - IAI46_03175 0.23 -0.1
680,611 - IAI46_03175 0.23 +0.1
680,618 + IAI46_03175 0.24 -1.6
680,619 - IAI46_03175 0.24 +0.8
680,620 + IAI46_03175 0.24 -1.9
680,621 - IAI46_03175 0.24 +0.7
680,656 + IAI46_03175 0.28 +0.6
680,657 - IAI46_03175 0.28 -1.9
680,807 - IAI46_03175 0.45 -0.2
680,807 - IAI46_03175 0.45 -0.0
681,065 + IAI46_03175 0.73 -1.3
681,065 + IAI46_03175 0.73 -0.1
681,066 - IAI46_03175 0.73 +0.4
681,066 - IAI46_03175 0.73 -0.2
681,069 + IAI46_03175 0.74 -0.1
681,069 + IAI46_03175 0.74 +0.8
681,069 + IAI46_03175 0.74 -0.8
681,070 - IAI46_03175 0.74 +0.1
681,070 - IAI46_03175 0.74 -2.3
681,143 + IAI46_03175 0.82 +1.0
681,143 + IAI46_03175 0.82 -0.3
681,158 + IAI46_03175 0.83 +0.1
681,158 + IAI46_03175 0.83 -0.4
681,159 - IAI46_03175 0.83 +0.3
681,159 - IAI46_03175 0.83 +0.6
681,159 - IAI46_03175 0.83 +0.3
681,159 - IAI46_03175 0.83 -2.9
681,163 + IAI46_03175 0.84 -0.8
681,226 + -0.7
681,226 + -0.3
681,227 - -0.3
681,231 - +0.3
681,231 - +0.1
681,251 + +0.6
681,251 + -0.5
681,252 - +0.4
681,252 - -0.5
681,268 + -0.1
681,268 + +0.3
681,269 - +0.4
681,269 - +0.8
681,269 - -0.9
681,286 + +0.1
681,301 + -0.1
681,350 - +0.4
681,390 + +0.9

Or see this region's nucleotide sequence