Strain Fitness in Serratia liquefaciens MT49 around IAI46_03100

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03090 and IAI46_03095 are separated by 69 nucleotidesIAI46_03095 and IAI46_03100 are separated by 390 nucleotidesIAI46_03100 and IAI46_03105 are separated by 156 nucleotides IAI46_03090: IAI46_03090 - transcriptional activator NhaR, at 661,270 to 662,169 _03090 IAI46_03095: IAI46_03095 - 30S ribosomal protein S20, at 662,239 to 662,499 _03095 IAI46_03100: IAI46_03100 - bifunctional riboflavin kinase/FAD synthetase, at 662,890 to 663,828 _03100 IAI46_03105: IAI46_03105 - isoleucine--tRNA ligase, at 663,985 to 666,801 _03105 Position (kb) 662 663 664Strain fitness (log2 ratio) -2 -1 0 1 2at 661.897 kb on - strand, within IAI46_03090at 661.925 kb on + strand, within IAI46_03090at 661.978 kb on + strand, within IAI46_03090at 662.011 kb on + strand, within IAI46_03090at 662.011 kb on + strand, within IAI46_03090at 662.022 kb on + strand, within IAI46_03090at 662.022 kb on + strand, within IAI46_03090at 662.023 kb on - strand, within IAI46_03090at 662.023 kb on - strand, within IAI46_03090at 662.026 kb on + strand, within IAI46_03090at 662.026 kb on + strand, within IAI46_03090at 662.026 kb on + strand, within IAI46_03090at 662.027 kb on - strand, within IAI46_03090at 662.027 kb on - strand, within IAI46_03090at 662.027 kb on - strand, within IAI46_03090at 662.028 kb on + strand, within IAI46_03090at 662.029 kb on - strand, within IAI46_03090at 662.058 kb on + strand, within IAI46_03090at 662.058 kb on + strand, within IAI46_03090at 662.058 kb on + strand, within IAI46_03090at 662.058 kb on + strand, within IAI46_03090at 662.058 kb on + strand, within IAI46_03090at 662.058 kb on + strand, within IAI46_03090at 662.059 kb on - strand, within IAI46_03090at 662.059 kb on - strand, within IAI46_03090at 662.059 kb on - strand, within IAI46_03090at 662.059 kb on - strand, within IAI46_03090at 662.059 kb on - strand, within IAI46_03090at 662.064 kb on + strand, within IAI46_03090at 662.064 kb on + strand, within IAI46_03090at 662.064 kb on + strand, within IAI46_03090at 662.080 kb on + strandat 662.080 kb on + strandat 662.081 kb on - strandat 662.081 kb on - strandat 662.081 kb on - strandat 662.083 kb on + strandat 662.083 kb on + strandat 662.083 kb on + strandat 662.083 kb on + strandat 662.083 kb on + strandat 662.083 kb on + strandat 662.083 kb on + strandat 662.083 kb on + strandat 662.084 kb on - strandat 662.084 kb on - strandat 662.167 kb on + strandat 662.168 kb on - strandat 662.592 kb on - strandat 662.621 kb on - strandat 662.644 kb on - strandat 662.664 kb on + strandat 662.664 kb on + strandat 662.665 kb on - strandat 662.755 kb on - strandat 662.786 kb on + strandat 662.787 kb on - strandat 662.787 kb on - strandat 662.800 kb on + strandat 662.800 kb on + strandat 662.800 kb on + strandat 662.800 kb on + strandat 662.800 kb on + strandat 662.800 kb on + strandat 662.800 kb on + strandat 662.800 kb on + strandat 662.800 kb on + strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.801 kb on - strandat 662.806 kb on + strandat 662.806 kb on + strandat 662.806 kb on + strandat 662.806 kb on + strandat 662.807 kb on - strandat 662.807 kb on - strandat 662.807 kb on - strandat 662.807 kb on - strandat 662.807 kb on - strandat 662.809 kb on + strandat 662.809 kb on + strandat 662.809 kb on + strandat 662.809 kb on + strandat 662.809 kb on + strandat 662.810 kb on - strandat 662.810 kb on - strandat 662.814 kb on - strandat 662.814 kb on - strandat 662.848 kb on + strandat 662.848 kb on + strandat 662.849 kb on - strandat 662.855 kb on + strandat 662.855 kb on + strandat 662.857 kb on + strandat 662.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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661,897 - IAI46_03090 0.70 +0.1
661,925 + IAI46_03090 0.73 +0.6
661,978 + IAI46_03090 0.79 -0.8
662,011 + IAI46_03090 0.82 +0.6
662,011 + IAI46_03090 0.82 +0.7
662,022 + IAI46_03090 0.84 +0.8
662,022 + IAI46_03090 0.84 -0.6
662,023 - IAI46_03090 0.84 +0.1
662,023 - IAI46_03090 0.84 -0.2
662,026 + IAI46_03090 0.84 +0.3
662,026 + IAI46_03090 0.84 +0.8
662,026 + IAI46_03090 0.84 -0.4
662,027 - IAI46_03090 0.84 -0.5
662,027 - IAI46_03090 0.84 +1.6
662,027 - IAI46_03090 0.84 +0.1
662,028 + IAI46_03090 0.84 -0.2
662,029 - IAI46_03090 0.84 +0.7
662,058 + IAI46_03090 0.88 +0.2
662,058 + IAI46_03090 0.88 -1.7
662,058 + IAI46_03090 0.88 -0.9
662,058 + IAI46_03090 0.88 -0.3
662,058 + IAI46_03090 0.88 +0.6
662,058 + IAI46_03090 0.88 +0.4
662,059 - IAI46_03090 0.88 +0.8
662,059 - IAI46_03090 0.88 +0.1
662,059 - IAI46_03090 0.88 -0.4
662,059 - IAI46_03090 0.88 -0.5
662,059 - IAI46_03090 0.88 -0.2
662,064 + IAI46_03090 0.88 -0.5
662,064 + IAI46_03090 0.88 +0.2
662,064 + IAI46_03090 0.88 -0.3
662,080 + -0.6
662,080 + -0.1
662,081 - -1.4
662,081 - +0.3
662,081 - +1.3
662,083 + -0.2
662,083 + +0.1
662,083 + -0.2
662,083 + +0.3
662,083 + -0.3
662,083 + +0.0
662,083 + +0.4
662,083 + -0.4
662,084 - -0.2
662,084 - +0.0
662,167 + +1.3
662,168 - +0.6
662,592 - +0.2
662,621 - -1.0
662,644 - -0.2
662,664 + -0.7
662,664 + -0.8
662,665 - -0.4
662,755 - +0.2
662,786 + -0.1
662,787 - +0.6
662,787 - +0.1
662,800 + +0.3
662,800 + +0.4
662,800 + -0.1
662,800 + -0.2
662,800 + +0.4
662,800 + +0.5
662,800 + -0.4
662,800 + -2.4
662,800 + -0.5
662,801 - -0.4
662,801 - +1.2
662,801 - -0.2
662,801 - -1.5
662,801 - -0.6
662,801 - -0.2
662,801 - -1.2
662,801 - -1.4
662,801 - +2.4
662,801 - +0.2
662,801 - +0.8
662,806 + +0.5
662,806 + -0.2
662,806 + +1.1
662,806 + -0.0
662,807 - +0.2
662,807 - +0.0
662,807 - -0.2
662,807 - -1.9
662,807 - -0.5
662,809 + +0.6
662,809 + +0.2
662,809 + -0.1
662,809 + +0.1
662,809 + +0.1
662,810 - +0.2
662,810 - +0.2
662,814 - +0.7
662,814 - -0.1
662,848 + +1.0
662,848 + -0.3
662,849 - -1.4
662,855 + -0.2
662,855 + -0.1
662,857 + -0.2
662,857 + +1.3

Or see this region's nucleotide sequence