Strain Fitness in Serratia liquefaciens MT49 around IAI46_03010

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03005 and IAI46_03010 are separated by 342 nucleotidesIAI46_03010 and IAI46_03015 are separated by 44 nucleotides IAI46_03005: IAI46_03005 - MDR efflux pump AcrAB transcriptional activator RobA, at 640,857 to 641,726 _03005 IAI46_03010: IAI46_03010 - protein CreA, at 642,069 to 642,548 _03010 IAI46_03015: IAI46_03015 - two-component system response regulator ArcA, at 642,593 to 643,309 _03015 Position (kb) 642 643Strain fitness (log2 ratio) -2 -1 0 1 2at 641.191 kb on + strand, within IAI46_03005at 641.191 kb on + strand, within IAI46_03005at 641.191 kb on + strand, within IAI46_03005at 641.192 kb on - strand, within IAI46_03005at 641.192 kb on - strand, within IAI46_03005at 641.228 kb on - strand, within IAI46_03005at 641.228 kb on - strand, within IAI46_03005at 641.357 kb on + strand, within IAI46_03005at 641.358 kb on - strand, within IAI46_03005at 641.419 kb on + strand, within IAI46_03005at 641.489 kb on - strand, within IAI46_03005at 641.493 kb on + strand, within IAI46_03005at 641.493 kb on + strand, within IAI46_03005at 641.493 kb on + strand, within IAI46_03005at 641.494 kb on - strand, within IAI46_03005at 641.494 kb on - strand, within IAI46_03005at 641.494 kb on - strand, within IAI46_03005at 641.567 kb on + strand, within IAI46_03005at 641.569 kb on + strand, within IAI46_03005at 641.569 kb on + strand, within IAI46_03005at 641.569 kb on + strand, within IAI46_03005at 641.569 kb on + strand, within IAI46_03005at 641.569 kb on + strand, within IAI46_03005at 641.569 kb on + strand, within IAI46_03005at 641.570 kb on - strand, within IAI46_03005at 641.592 kb on - strand, within IAI46_03005at 641.592 kb on - strand, within IAI46_03005at 641.594 kb on + strand, within IAI46_03005at 641.595 kb on - strand, within IAI46_03005at 641.613 kb on + strand, within IAI46_03005at 641.614 kb on - strand, within IAI46_03005at 641.614 kb on - strand, within IAI46_03005at 641.614 kb on - strand, within IAI46_03005at 641.693 kb on + strandat 641.694 kb on - strandat 641.726 kb on + strandat 641.727 kb on - strandat 641.740 kb on - strandat 641.740 kb on - strandat 641.740 kb on - strandat 641.740 kb on - strandat 641.878 kb on - strandat 641.878 kb on - strandat 641.895 kb on - strandat 641.895 kb on - strandat 641.908 kb on - strandat 641.908 kb on - strandat 641.911 kb on - strandat 642.021 kb on + strandat 642.021 kb on + strandat 642.021 kb on + strandat 642.021 kb on + strandat 642.021 kb on + strandat 642.063 kb on - strandat 642.115 kb on + strandat 642.157 kb on + strand, within IAI46_03010at 642.219 kb on - strand, within IAI46_03010at 642.219 kb on - strand, within IAI46_03010at 642.234 kb on + strand, within IAI46_03010at 642.235 kb on - strand, within IAI46_03010at 642.237 kb on - strand, within IAI46_03010at 642.263 kb on + strand, within IAI46_03010at 642.263 kb on + strand, within IAI46_03010at 642.344 kb on + strand, within IAI46_03010at 642.464 kb on + strand, within IAI46_03010at 642.547 kb on - strandat 642.578 kb on - strandat 642.578 kb on - strandat 642.594 kb on + strandat 642.595 kb on - strandat 642.898 kb on + strand, within IAI46_03015at 642.899 kb on - strand, within IAI46_03015at 642.899 kb on - strand, within IAI46_03015at 642.900 kb on + strand, within IAI46_03015at 642.900 kb on + strand, within IAI46_03015at 642.901 kb on - strand, within IAI46_03015at 642.995 kb on - strand, within IAI46_03015at 643.009 kb on + strand, within IAI46_03015at 643.009 kb on + strand, within IAI46_03015at 643.010 kb on - strand, within IAI46_03015at 643.011 kb on + strand, within IAI46_03015at 643.011 kb on + strand, within IAI46_03015at 643.011 kb on + strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.012 kb on - strand, within IAI46_03015at 643.045 kb on + strand, within IAI46_03015at 643.169 kb on - strand, within IAI46_03015at 643.227 kb on + strand, within IAI46_03015at 643.227 kb on + strand, within IAI46_03015at 643.261 kb on + strandat 643.320 kb on + strandat 643.320 kb on + strandat 643.321 kb on - strandat 643.345 kb on - strandat 643.352 kb on - strandat 643.388 kb on + strandat 643.418 kb on + strandat 643.418 kb on + strandat 643.418 kb on + strandat 643.419 kb on - strandat 643.419 kb on - strandat 643.419 kb on - strandat 643.428 kb on - strandat 643.428 kb on - strandat 643.474 kb on - strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.497 kb on + strandat 643.498 kb on - strandat 643.498 kb on - strandat 643.498 kb on - strandat 643.498 kb on - strandat 643.498 kb on - strandat 643.526 kb on + strandat 643.527 kb on - strandat 643.537 kb on + strandat 643.537 kb on + strandat 643.537 kb on + strandat 643.538 kb on - strandat 643.538 kb on - strandat 643.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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641,191 + IAI46_03005 0.38 +0.2
641,191 + IAI46_03005 0.38 -0.3
641,191 + IAI46_03005 0.38 -0.7
641,192 - IAI46_03005 0.39 +0.4
641,192 - IAI46_03005 0.39 -0.5
641,228 - IAI46_03005 0.43 -0.4
641,228 - IAI46_03005 0.43 +0.4
641,357 + IAI46_03005 0.57 +0.1
641,358 - IAI46_03005 0.58 -0.5
641,419 + IAI46_03005 0.65 -0.4
641,489 - IAI46_03005 0.73 +0.7
641,493 + IAI46_03005 0.73 -0.8
641,493 + IAI46_03005 0.73 +1.7
641,493 + IAI46_03005 0.73 -0.4
641,494 - IAI46_03005 0.73 -1.4
641,494 - IAI46_03005 0.73 -0.3
641,494 - IAI46_03005 0.73 +0.6
641,567 + IAI46_03005 0.82 -0.1
641,569 + IAI46_03005 0.82 -0.1
641,569 + IAI46_03005 0.82 -0.1
641,569 + IAI46_03005 0.82 +0.0
641,569 + IAI46_03005 0.82 -0.9
641,569 + IAI46_03005 0.82 +0.1
641,569 + IAI46_03005 0.82 +2.2
641,570 - IAI46_03005 0.82 +0.1
641,592 - IAI46_03005 0.84 -1.3
641,592 - IAI46_03005 0.84 -0.1
641,594 + IAI46_03005 0.85 +0.8
641,595 - IAI46_03005 0.85 +0.8
641,613 + IAI46_03005 0.87 +0.6
641,614 - IAI46_03005 0.87 -2.0
641,614 - IAI46_03005 0.87 +0.6
641,614 - IAI46_03005 0.87 -2.3
641,693 + +0.0
641,694 - +0.6
641,726 + -0.9
641,727 - -0.9
641,740 - -0.1
641,740 - -1.1
641,740 - +1.8
641,740 - +0.4
641,878 - +1.0
641,878 - +1.1
641,895 - -0.0
641,895 - -0.4
641,908 - +0.2
641,908 - +0.0
641,911 - +0.7
642,021 + -2.2
642,021 + +0.1
642,021 + +0.3
642,021 + -0.5
642,021 + -0.2
642,063 - +0.7
642,115 + +0.7
642,157 + IAI46_03010 0.18 +0.3
642,219 - IAI46_03010 0.31 -1.1
642,219 - IAI46_03010 0.31 +0.2
642,234 + IAI46_03010 0.34 -0.0
642,235 - IAI46_03010 0.35 +1.1
642,237 - IAI46_03010 0.35 +0.3
642,263 + IAI46_03010 0.40 -0.6
642,263 + IAI46_03010 0.40 +0.3
642,344 + IAI46_03010 0.57 -0.1
642,464 + IAI46_03010 0.82 -0.2
642,547 - +0.9
642,578 - +0.4
642,578 - -0.4
642,594 + +0.2
642,595 - +1.0
642,898 + IAI46_03015 0.43 +0.9
642,899 - IAI46_03015 0.43 -0.4
642,899 - IAI46_03015 0.43 -0.5
642,900 + IAI46_03015 0.43 -1.2
642,900 + IAI46_03015 0.43 +0.2
642,901 - IAI46_03015 0.43 -0.6
642,995 - IAI46_03015 0.56 -1.5
643,009 + IAI46_03015 0.58 +0.4
643,009 + IAI46_03015 0.58 +0.2
643,010 - IAI46_03015 0.58 -1.0
643,011 + IAI46_03015 0.58 -0.2
643,011 + IAI46_03015 0.58 -0.4
643,011 + IAI46_03015 0.58 -0.2
643,012 - IAI46_03015 0.58 -0.7
643,012 - IAI46_03015 0.58 -0.2
643,012 - IAI46_03015 0.58 -0.9
643,012 - IAI46_03015 0.58 -1.3
643,012 - IAI46_03015 0.58 -0.8
643,045 + IAI46_03015 0.63 +0.4
643,169 - IAI46_03015 0.80 +0.7
643,227 + IAI46_03015 0.88 -1.2
643,227 + IAI46_03015 0.88 +0.2
643,261 + -2.1
643,320 + -0.5
643,320 + -0.9
643,321 - -0.6
643,345 - +0.4
643,352 - -1.9
643,388 + -0.7
643,418 + +0.0
643,418 + +0.2
643,418 + -1.1
643,419 - -0.7
643,419 - -0.2
643,419 - +0.0
643,428 - -0.9
643,428 - -1.1
643,474 - +0.7
643,497 + -1.2
643,497 + -1.7
643,497 + -0.4
643,497 + -2.2
643,497 + -0.6
643,497 + +0.7
643,497 + +0.3
643,498 - -0.7
643,498 - -0.4
643,498 - -1.2
643,498 - +0.3
643,498 - -0.2
643,526 + +0.4
643,527 - -0.3
643,537 + -0.1
643,537 + -1.8
643,537 + +0.2
643,538 - +0.2
643,538 - -0.3
643,538 - -0.2

Or see this region's nucleotide sequence