Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02860 and IAI46_02865 are separated by 281 nucleotides IAI46_02865 and IAI46_02870 overlap by 56 nucleotides IAI46_02870 and IAI46_02875 are separated by 170 nucleotides
IAI46_02860: IAI46_02860 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 611,376 to 612,419
_02860
IAI46_02865: IAI46_02865 - DNA polymerase III subunit psi, at 612,701 to 613,138
_02865
IAI46_02870: IAI46_02870 - ribosomal protein S18-alanine N-acetyltransferase, at 613,083 to 613,526
_02870
IAI46_02875: IAI46_02875 - peptide chain release factor 3, at 613,697 to 615,286
_02875
Position (kb) 612
613
614 Strain fitness (log2 ratio) -2
-1
0
1 at 611.993 kb on - strand, within IAI46_02860 at 611.993 kb on - strand, within IAI46_02860 at 612.037 kb on + strand, within IAI46_02860 at 612.037 kb on + strand, within IAI46_02860 at 612.037 kb on + strand, within IAI46_02860 at 612.037 kb on + strand, within IAI46_02860 at 612.037 kb on + strand, within IAI46_02860 at 612.038 kb on - strand, within IAI46_02860 at 612.173 kb on - strand, within IAI46_02860 at 612.175 kb on + strand, within IAI46_02860 at 612.175 kb on + strand, within IAI46_02860 at 612.176 kb on - strand, within IAI46_02860 at 612.176 kb on - strand, within IAI46_02860 at 612.176 kb on - strand, within IAI46_02860 at 612.176 kb on - strand, within IAI46_02860 at 612.176 kb on - strand, within IAI46_02860 at 612.176 kb on - strand, within IAI46_02860 at 612.259 kb on - strand, within IAI46_02860 at 612.259 kb on - strand, within IAI46_02860 at 612.365 kb on + strand at 612.453 kb on + strand at 612.453 kb on + strand at 612.453 kb on + strand at 612.454 kb on - strand at 612.455 kb on + strand at 612.455 kb on + strand at 612.455 kb on + strand at 612.455 kb on + strand at 612.455 kb on + strand at 612.456 kb on - strand at 612.456 kb on - strand at 612.456 kb on - strand at 612.456 kb on - strand at 612.456 kb on - strand at 612.471 kb on + strand at 612.548 kb on + strand at 612.637 kb on + strand at 612.642 kb on + strand at 613.092 kb on - strand at 613.097 kb on + strand at 613.097 kb on + strand at 613.200 kb on + strand, within IAI46_02870 at 613.201 kb on - strand, within IAI46_02870 at 613.250 kb on + strand, within IAI46_02870 at 613.426 kb on - strand, within IAI46_02870 at 613.426 kb on - strand, within IAI46_02870 at 613.426 kb on - strand, within IAI46_02870 at 613.426 kb on - strand, within IAI46_02870 at 613.463 kb on + strand, within IAI46_02870 at 613.463 kb on + strand, within IAI46_02870 at 613.468 kb on - strand, within IAI46_02870 at 613.468 kb on - strand, within IAI46_02870 at 613.471 kb on - strand, within IAI46_02870 at 613.524 kb on + strand at 613.525 kb on - strand at 613.610 kb on + strand at 613.610 kb on + strand at 613.618 kb on - strand at 613.622 kb on - strand at 613.676 kb on + strand at 613.676 kb on + strand at 613.897 kb on + strand, within IAI46_02875 at 613.898 kb on - strand, within IAI46_02875 at 613.898 kb on - strand, within IAI46_02875 at 613.991 kb on - strand, within IAI46_02875 at 613.991 kb on - strand, within IAI46_02875 at 613.995 kb on - strand, within IAI46_02875 at 613.995 kb on - strand, within IAI46_02875 at 613.995 kb on - strand, within IAI46_02875 at 614.068 kb on + strand, within IAI46_02875 at 614.082 kb on + strand, within IAI46_02875 at 614.116 kb on + strand, within IAI46_02875
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 611,993 - IAI46_02860 0.59 +0.3 611,993 - IAI46_02860 0.59 +0.1 612,037 + IAI46_02860 0.63 +0.6 612,037 + IAI46_02860 0.63 -0.1 612,037 + IAI46_02860 0.63 -0.2 612,037 + IAI46_02860 0.63 -0.9 612,037 + IAI46_02860 0.63 +0.3 612,038 - IAI46_02860 0.63 -0.7 612,173 - IAI46_02860 0.76 -1.1 612,175 + IAI46_02860 0.77 -0.4 612,175 + IAI46_02860 0.77 -1.4 612,176 - IAI46_02860 0.77 +0.1 612,176 - IAI46_02860 0.77 -0.9 612,176 - IAI46_02860 0.77 +0.6 612,176 - IAI46_02860 0.77 -0.1 612,176 - IAI46_02860 0.77 +1.2 612,176 - IAI46_02860 0.77 -0.5 612,259 - IAI46_02860 0.85 -2.1 612,259 - IAI46_02860 0.85 -1.1 612,365 + -1.7 612,453 + +0.0 612,453 + +0.4 612,453 + -1.4 612,454 - -2.2 612,455 + -0.1 612,455 + -0.2 612,455 + -0.7 612,455 + -1.5 612,455 + -0.9 612,456 - -0.4 612,456 - -1.3 612,456 - +0.3 612,456 - -0.6 612,456 - -0.6 612,471 + -0.1 612,548 + -0.8 612,637 + +0.1 612,642 + +0.2 613,092 - -1.6 613,097 + +0.3 613,097 + -0.8 613,200 + IAI46_02870 0.26 -0.6 613,201 - IAI46_02870 0.27 +1.1 613,250 + IAI46_02870 0.38 -0.7 613,426 - IAI46_02870 0.77 +0.2 613,426 - IAI46_02870 0.77 -0.8 613,426 - IAI46_02870 0.77 -0.3 613,426 - IAI46_02870 0.77 -0.2 613,463 + IAI46_02870 0.86 -0.3 613,463 + IAI46_02870 0.86 -1.2 613,468 - IAI46_02870 0.87 +0.1 613,468 - IAI46_02870 0.87 +0.3 613,471 - IAI46_02870 0.87 -0.8 613,524 + -0.2 613,525 - -1.3 613,610 + +0.6 613,610 + +0.1 613,618 - +0.2 613,622 - +0.9 613,676 + -1.9 613,676 + +1.2 613,897 + IAI46_02875 0.13 -0.1 613,898 - IAI46_02875 0.13 +0.4 613,898 - IAI46_02875 0.13 -0.2 613,991 - IAI46_02875 0.18 -0.4 613,991 - IAI46_02875 0.18 +0.8 613,995 - IAI46_02875 0.19 -1.0 613,995 - IAI46_02875 0.19 -0.5 613,995 - IAI46_02875 0.19 -1.4 614,068 + IAI46_02875 0.23 -0.5 614,082 + IAI46_02875 0.24 +0.4 614,116 + IAI46_02875 0.26 -0.6
Or see this region's nucleotide sequence