Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02830 and IAI46_02835 are separated by 87 nucleotides IAI46_02835 and IAI46_02840 are separated by 44 nucleotides IAI46_02840 and IAI46_02845 are separated by 34 nucleotides IAI46_02845 and IAI46_02850 are separated by 72 nucleotides IAI46_02850 and IAI46_02855 are separated by 132 nucleotides
IAI46_02830: IAI46_02830 - DUF1435 domain-containing protein, at 608,462 to 608,746
_02830
IAI46_02835: IAI46_02835 - tRNA-Leu, at 608,834 to 608,920
_02835
IAI46_02840: IAI46_02840 - tRNA-Leu, at 608,965 to 609,051
_02840
IAI46_02845: IAI46_02845 - tRNA-Leu, at 609,086 to 609,172
_02845
IAI46_02850: IAI46_02850 - LysR family transcriptional regulator, at 609,245 to 610,189
_02850
IAI46_02855: IAI46_02855 - aldo/keto reductase, at 610,322 to 611,314
_02855
Position (kb) 609
610
611 Strain fitness (log2 ratio) -2
-1
0
1
2 at 608.284 kb on + strand at 608.284 kb on + strand at 608.284 kb on + strand at 608.285 kb on - strand at 608.285 kb on - strand at 608.346 kb on - strand at 608.362 kb on + strand at 608.362 kb on + strand at 608.362 kb on + strand at 608.362 kb on + strand at 608.363 kb on - strand at 608.363 kb on - strand at 608.363 kb on - strand at 608.363 kb on - strand at 608.562 kb on + strand, within IAI46_02830 at 608.562 kb on + strand, within IAI46_02830 at 608.593 kb on + strand, within IAI46_02830 at 608.593 kb on + strand, within IAI46_02830 at 608.672 kb on + strand, within IAI46_02830 at 608.693 kb on - strand, within IAI46_02830 at 608.745 kb on - strand at 608.797 kb on - strand at 608.797 kb on - strand at 608.797 kb on - strand at 608.797 kb on - strand at 608.870 kb on - strand, within IAI46_02835 at 608.878 kb on + strand, within IAI46_02835 at 608.953 kb on - strand at 608.953 kb on - strand at 608.953 kb on - strand at 609.001 kb on - strand, within IAI46_02840 at 609.010 kb on - strand, within IAI46_02840 at 609.010 kb on - strand, within IAI46_02840 at 609.068 kb on - strand at 609.068 kb on - strand at 609.070 kb on - strand at 609.070 kb on - strand at 609.083 kb on - strand at 609.083 kb on - strand at 609.181 kb on + strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.195 kb on - strand at 609.201 kb on - strand at 609.235 kb on - strand at 609.243 kb on - strand at 609.246 kb on + strand at 609.247 kb on - strand at 609.247 kb on - strand at 609.247 kb on - strand at 609.301 kb on - strand at 609.301 kb on - strand at 609.372 kb on + strand, within IAI46_02850 at 609.372 kb on + strand, within IAI46_02850 at 609.373 kb on - strand, within IAI46_02850 at 609.373 kb on - strand, within IAI46_02850 at 609.373 kb on - strand, within IAI46_02850 at 609.373 kb on - strand, within IAI46_02850 at 609.381 kb on + strand, within IAI46_02850 at 609.459 kb on + strand, within IAI46_02850 at 609.507 kb on + strand, within IAI46_02850 at 609.508 kb on - strand, within IAI46_02850 at 609.615 kb on + strand, within IAI46_02850 at 609.616 kb on - strand, within IAI46_02850 at 609.620 kb on + strand, within IAI46_02850 at 609.678 kb on + strand, within IAI46_02850 at 609.678 kb on + strand, within IAI46_02850 at 609.678 kb on + strand, within IAI46_02850 at 609.678 kb on + strand, within IAI46_02850 at 609.679 kb on - strand, within IAI46_02850 at 609.773 kb on + strand, within IAI46_02850 at 609.773 kb on + strand, within IAI46_02850 at 609.789 kb on - strand, within IAI46_02850 at 609.899 kb on - strand, within IAI46_02850 at 609.993 kb on + strand, within IAI46_02850 at 609.994 kb on - strand, within IAI46_02850 at 609.997 kb on - strand, within IAI46_02850 at 609.997 kb on - strand, within IAI46_02850 at 610.022 kb on + strand, within IAI46_02850 at 610.023 kb on - strand, within IAI46_02850 at 610.023 kb on - strand, within IAI46_02850 at 610.023 kb on - strand, within IAI46_02850 at 610.079 kb on - strand, within IAI46_02850 at 610.106 kb on + strand at 610.159 kb on + strand at 610.217 kb on + strand at 610.243 kb on + strand at 610.299 kb on - strand at 610.339 kb on - strand at 610.339 kb on - strand at 610.487 kb on - strand, within IAI46_02855 at 610.487 kb on - strand, within IAI46_02855 at 610.490 kb on + strand, within IAI46_02855 at 610.491 kb on - strand, within IAI46_02855 at 610.491 kb on - strand, within IAI46_02855 at 610.688 kb on + strand, within IAI46_02855 at 610.689 kb on - strand, within IAI46_02855 at 610.691 kb on + strand, within IAI46_02855 at 610.691 kb on + strand, within IAI46_02855 at 610.734 kb on + strand, within IAI46_02855 at 610.734 kb on + strand, within IAI46_02855 at 610.734 kb on + strand, within IAI46_02855 at 610.734 kb on + strand, within IAI46_02855 at 610.735 kb on - strand, within IAI46_02855 at 610.735 kb on - strand, within IAI46_02855 at 610.735 kb on - strand, within IAI46_02855 at 610.735 kb on - strand, within IAI46_02855 at 610.739 kb on - strand, within IAI46_02855 at 610.739 kb on - strand, within IAI46_02855 at 610.739 kb on - strand, within IAI46_02855 at 610.775 kb on + strand, within IAI46_02855 at 610.775 kb on + strand, within IAI46_02855 at 610.777 kb on + strand, within IAI46_02855 at 610.786 kb on - strand, within IAI46_02855 at 610.823 kb on - strand, within IAI46_02855 at 610.856 kb on + strand, within IAI46_02855 at 610.856 kb on + strand, within IAI46_02855 at 610.856 kb on + strand, within IAI46_02855 at 610.857 kb on - strand, within IAI46_02855 at 610.857 kb on - strand, within IAI46_02855 at 610.857 kb on - strand, within IAI46_02855 at 610.890 kb on + strand, within IAI46_02855 at 610.931 kb on + strand, within IAI46_02855 at 610.933 kb on + strand, within IAI46_02855 at 610.934 kb on - strand, within IAI46_02855 at 611.031 kb on + strand, within IAI46_02855
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 608,284 + -0.5 608,284 + +1.1 608,284 + -1.1 608,285 - -0.6 608,285 - +0.9 608,346 - -0.2 608,362 + -0.1 608,362 + +1.1 608,362 + +0.0 608,362 + +0.4 608,363 - +0.3 608,363 - +0.4 608,363 - -0.6 608,363 - +0.1 608,562 + IAI46_02830 0.35 -0.2 608,562 + IAI46_02830 0.35 +0.6 608,593 + IAI46_02830 0.46 -0.3 608,593 + IAI46_02830 0.46 +0.5 608,672 + IAI46_02830 0.74 +0.6 608,693 - IAI46_02830 0.81 -2.1 608,745 - -1.5 608,797 - +0.9 608,797 - +0.2 608,797 - -0.7 608,797 - +0.0 608,870 - IAI46_02835 0.41 +0.2 608,878 + IAI46_02835 0.51 +0.5 608,953 - +0.2 608,953 - -0.3 608,953 - -0.4 609,001 - IAI46_02840 0.41 -0.6 609,010 - IAI46_02840 0.52 +0.3 609,010 - IAI46_02840 0.52 -0.6 609,068 - +0.9 609,068 - +0.4 609,070 - -0.4 609,070 - +0.3 609,083 - -0.0 609,083 - -0.1 609,181 + +0.3 609,182 - +0.5 609,182 - +0.2 609,182 - +0.2 609,182 - -0.3 609,195 - -0.6 609,201 - +0.4 609,235 - +0.2 609,243 - -0.9 609,246 + -2.1 609,247 - -0.7 609,247 - -0.4 609,247 - -0.5 609,301 - -1.3 609,301 - +0.1 609,372 + IAI46_02850 0.13 -0.9 609,372 + IAI46_02850 0.13 -0.5 609,373 - IAI46_02850 0.14 +0.1 609,373 - IAI46_02850 0.14 +0.8 609,373 - IAI46_02850 0.14 +0.9 609,373 - IAI46_02850 0.14 +1.2 609,381 + IAI46_02850 0.14 +0.8 609,459 + IAI46_02850 0.23 +0.5 609,507 + IAI46_02850 0.28 -0.6 609,508 - IAI46_02850 0.28 +0.2 609,615 + IAI46_02850 0.39 -1.0 609,616 - IAI46_02850 0.39 +1.4 609,620 + IAI46_02850 0.40 -0.6 609,678 + IAI46_02850 0.46 +0.5 609,678 + IAI46_02850 0.46 +1.2 609,678 + IAI46_02850 0.46 -0.2 609,678 + IAI46_02850 0.46 +0.0 609,679 - IAI46_02850 0.46 +0.5 609,773 + IAI46_02850 0.56 -1.1 609,773 + IAI46_02850 0.56 +0.1 609,789 - IAI46_02850 0.58 -0.1 609,899 - IAI46_02850 0.69 -1.1 609,993 + IAI46_02850 0.79 +0.6 609,994 - IAI46_02850 0.79 +0.2 609,997 - IAI46_02850 0.80 -0.6 609,997 - IAI46_02850 0.80 +1.7 610,022 + IAI46_02850 0.82 -0.9 610,023 - IAI46_02850 0.82 +0.2 610,023 - IAI46_02850 0.82 -0.3 610,023 - IAI46_02850 0.82 -0.8 610,079 - IAI46_02850 0.88 -0.1 610,106 + +0.2 610,159 + -1.1 610,217 + -2.5 610,243 + -0.4 610,299 - -0.2 610,339 - +0.1 610,339 - -0.3 610,487 - IAI46_02855 0.17 +1.9 610,487 - IAI46_02855 0.17 -0.7 610,490 + IAI46_02855 0.17 +0.8 610,491 - IAI46_02855 0.17 +0.6 610,491 - IAI46_02855 0.17 +0.7 610,688 + IAI46_02855 0.37 -1.1 610,689 - IAI46_02855 0.37 -0.6 610,691 + IAI46_02855 0.37 +0.7 610,691 + IAI46_02855 0.37 +0.4 610,734 + IAI46_02855 0.41 -0.2 610,734 + IAI46_02855 0.41 -0.9 610,734 + IAI46_02855 0.41 -0.2 610,734 + IAI46_02855 0.41 +0.1 610,735 - IAI46_02855 0.42 +1.6 610,735 - IAI46_02855 0.42 +0.3 610,735 - IAI46_02855 0.42 +0.3 610,735 - IAI46_02855 0.42 -1.3 610,739 - IAI46_02855 0.42 -1.7 610,739 - IAI46_02855 0.42 -0.4 610,739 - IAI46_02855 0.42 +0.0 610,775 + IAI46_02855 0.46 +0.6 610,775 + IAI46_02855 0.46 -2.4 610,777 + IAI46_02855 0.46 -0.5 610,786 - IAI46_02855 0.47 +1.1 610,823 - IAI46_02855 0.50 +1.3 610,856 + IAI46_02855 0.54 +0.7 610,856 + IAI46_02855 0.54 +0.7 610,856 + IAI46_02855 0.54 -0.9 610,857 - IAI46_02855 0.54 -0.3 610,857 - IAI46_02855 0.54 +0.8 610,857 - IAI46_02855 0.54 +0.3 610,890 + IAI46_02855 0.57 -1.8 610,931 + IAI46_02855 0.61 +0.5 610,933 + IAI46_02855 0.62 +0.5 610,934 - IAI46_02855 0.62 +0.1 611,031 + IAI46_02855 0.71 -0.1
Or see this region's nucleotide sequence