Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02715 and IAI46_02720 are separated by 96 nucleotides IAI46_02720 and IAI46_02725 are separated by 359 nucleotides IAI46_02725 and IAI46_02730 overlap by 4 nucleotides IAI46_02730 and IAI46_02735 overlap by 4 nucleotides
IAI46_02715: IAI46_02715 - SDR family oxidoreductase, at 585,866 to 586,657
_02715
IAI46_02720: IAI46_02720 - homoprotocatechuate degradation operon regulator HpaR, at 586,754 to 587,206
_02720
IAI46_02725: IAI46_02725 - fumarylacetoacetate hydrolase family protein, at 587,566 to 588,198
_02725
IAI46_02730: IAI46_02730 - fumarylacetoacetate hydrolase family protein, at 588,195 to 588,959
_02730
IAI46_02735: IAI46_02735 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 588,956 to 590,410
_02735
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1 at 586.586 kb on + strand at 586.587 kb on - strand at 586.587 kb on - strand at 586.587 kb on - strand at 586.587 kb on - strand at 586.587 kb on - strand at 586.588 kb on + strand at 586.588 kb on + strand at 586.588 kb on + strand at 586.588 kb on + strand at 586.589 kb on - strand at 586.678 kb on + strand at 586.678 kb on + strand at 586.682 kb on - strand at 586.729 kb on - strand at 586.742 kb on + strand at 586.742 kb on + strand at 586.824 kb on - strand, within IAI46_02720 at 586.878 kb on + strand, within IAI46_02720 at 586.878 kb on + strand, within IAI46_02720 at 586.878 kb on + strand, within IAI46_02720 at 586.889 kb on + strand, within IAI46_02720 at 586.890 kb on - strand, within IAI46_02720 at 586.890 kb on - strand, within IAI46_02720 at 586.911 kb on + strand, within IAI46_02720 at 586.911 kb on + strand, within IAI46_02720 at 586.911 kb on + strand, within IAI46_02720 at 586.912 kb on - strand, within IAI46_02720 at 586.912 kb on - strand, within IAI46_02720 at 586.912 kb on - strand, within IAI46_02720 at 586.912 kb on - strand, within IAI46_02720 at 586.944 kb on + strand, within IAI46_02720 at 586.945 kb on - strand, within IAI46_02720 at 586.945 kb on - strand, within IAI46_02720 at 586.945 kb on - strand, within IAI46_02720 at 586.945 kb on - strand, within IAI46_02720 at 586.945 kb on - strand, within IAI46_02720 at 586.990 kb on + strand, within IAI46_02720 at 586.991 kb on - strand, within IAI46_02720 at 586.991 kb on - strand, within IAI46_02720 at 587.206 kb on + strand at 587.206 kb on + strand at 587.206 kb on + strand at 587.207 kb on - strand at 587.207 kb on - strand at 587.207 kb on - strand at 587.207 kb on - strand at 587.222 kb on + strand at 587.223 kb on - strand at 587.223 kb on - strand at 587.224 kb on + strand at 587.225 kb on - strand at 587.225 kb on - strand at 587.237 kb on + strand at 587.237 kb on + strand at 587.250 kb on - strand at 587.250 kb on - strand at 587.289 kb on + strand at 587.412 kb on - strand at 587.412 kb on - strand at 587.499 kb on - strand at 587.500 kb on + strand at 587.501 kb on - strand at 587.613 kb on - strand at 587.649 kb on + strand, within IAI46_02725 at 587.649 kb on + strand, within IAI46_02725 at 587.650 kb on - strand, within IAI46_02725 at 587.818 kb on + strand, within IAI46_02725 at 587.819 kb on - strand, within IAI46_02725 at 587.969 kb on - strand, within IAI46_02725 at 588.055 kb on - strand, within IAI46_02725 at 588.055 kb on - strand, within IAI46_02725 at 588.173 kb on + strand at 588.233 kb on + strand at 588.234 kb on - strand at 588.351 kb on + strand, within IAI46_02730 at 588.471 kb on + strand, within IAI46_02730 at 588.471 kb on + strand, within IAI46_02730 at 588.472 kb on - strand, within IAI46_02730 at 588.472 kb on - strand, within IAI46_02730 at 588.472 kb on - strand, within IAI46_02730 at 588.472 kb on - strand, within IAI46_02730 at 588.473 kb on + strand, within IAI46_02730 at 588.473 kb on + strand, within IAI46_02730 at 588.473 kb on + strand, within IAI46_02730 at 588.473 kb on + strand, within IAI46_02730 at 588.473 kb on + strand, within IAI46_02730 at 588.473 kb on + strand, within IAI46_02730 at 588.474 kb on - strand, within IAI46_02730 at 588.474 kb on - strand, within IAI46_02730 at 588.474 kb on - strand, within IAI46_02730 at 588.474 kb on - strand, within IAI46_02730 at 588.480 kb on + strand, within IAI46_02730 at 588.481 kb on - strand, within IAI46_02730 at 588.549 kb on + strand, within IAI46_02730 at 588.550 kb on - strand, within IAI46_02730 at 588.550 kb on - strand, within IAI46_02730 at 588.561 kb on + strand, within IAI46_02730 at 588.562 kb on - strand, within IAI46_02730 at 588.580 kb on - strand, within IAI46_02730 at 588.606 kb on + strand, within IAI46_02730 at 588.610 kb on - strand, within IAI46_02730 at 588.663 kb on + strand, within IAI46_02730 at 588.663 kb on + strand, within IAI46_02730 at 588.663 kb on + strand, within IAI46_02730 at 588.663 kb on + strand, within IAI46_02730 at 588.663 kb on + strand, within IAI46_02730 at 588.663 kb on + strand, within IAI46_02730 at 588.664 kb on - strand, within IAI46_02730 at 588.717 kb on + strand, within IAI46_02730 at 588.717 kb on + strand, within IAI46_02730 at 588.717 kb on + strand, within IAI46_02730 at 588.778 kb on - strand, within IAI46_02730 at 588.789 kb on + strand, within IAI46_02730 at 588.790 kb on - strand, within IAI46_02730 at 589.007 kb on + strand at 589.015 kb on + strand at 589.015 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 586,586 + +0.6 586,587 - +0.2 586,587 - +0.7 586,587 - -0.3 586,587 - +0.5 586,587 - +0.6 586,588 + +0.2 586,588 + +0.7 586,588 + -0.3 586,588 + +0.4 586,589 - +1.0 586,678 + +0.1 586,678 + -0.5 586,682 - -0.5 586,729 - +0.2 586,742 + +0.3 586,742 + +0.2 586,824 - IAI46_02720 0.15 -0.1 586,878 + IAI46_02720 0.27 +0.4 586,878 + IAI46_02720 0.27 -0.2 586,878 + IAI46_02720 0.27 -0.5 586,889 + IAI46_02720 0.30 +0.6 586,890 - IAI46_02720 0.30 -1.4 586,890 - IAI46_02720 0.30 +1.1 586,911 + IAI46_02720 0.35 -0.6 586,911 + IAI46_02720 0.35 +0.4 586,911 + IAI46_02720 0.35 -0.5 586,912 - IAI46_02720 0.35 -0.3 586,912 - IAI46_02720 0.35 +0.3 586,912 - IAI46_02720 0.35 +0.6 586,912 - IAI46_02720 0.35 +0.5 586,944 + IAI46_02720 0.42 -0.2 586,945 - IAI46_02720 0.42 -0.5 586,945 - IAI46_02720 0.42 -0.2 586,945 - IAI46_02720 0.42 -0.3 586,945 - IAI46_02720 0.42 -0.3 586,945 - IAI46_02720 0.42 -1.2 586,990 + IAI46_02720 0.52 +0.4 586,991 - IAI46_02720 0.52 +0.8 586,991 - IAI46_02720 0.52 -0.1 587,206 + +0.3 587,206 + +1.5 587,206 + -0.6 587,207 - -2.5 587,207 - +0.2 587,207 - +0.9 587,207 - +0.5 587,222 + -0.2 587,223 - -0.6 587,223 - -1.0 587,224 + -0.2 587,225 - +0.4 587,225 - +0.0 587,237 + -0.1 587,237 + +0.3 587,250 - +0.3 587,250 - +1.0 587,289 + -0.2 587,412 - -0.5 587,412 - -0.2 587,499 - +0.0 587,500 + +0.7 587,501 - -1.2 587,613 - -0.0 587,649 + IAI46_02725 0.13 -1.8 587,649 + IAI46_02725 0.13 +0.1 587,650 - IAI46_02725 0.13 -0.6 587,818 + IAI46_02725 0.40 +0.3 587,819 - IAI46_02725 0.40 +0.1 587,969 - IAI46_02725 0.64 +0.1 588,055 - IAI46_02725 0.77 +0.7 588,055 - IAI46_02725 0.77 -0.1 588,173 + -0.6 588,233 + -1.7 588,234 - -0.5 588,351 + IAI46_02730 0.20 +0.6 588,471 + IAI46_02730 0.36 +0.5 588,471 + IAI46_02730 0.36 -0.0 588,472 - IAI46_02730 0.36 -1.2 588,472 - IAI46_02730 0.36 +0.6 588,472 - IAI46_02730 0.36 -0.4 588,472 - IAI46_02730 0.36 +1.1 588,473 + IAI46_02730 0.36 +0.4 588,473 + IAI46_02730 0.36 -0.0 588,473 + IAI46_02730 0.36 -0.0 588,473 + IAI46_02730 0.36 -0.1 588,473 + IAI46_02730 0.36 +0.3 588,473 + IAI46_02730 0.36 +0.7 588,474 - IAI46_02730 0.36 +0.2 588,474 - IAI46_02730 0.36 -1.0 588,474 - IAI46_02730 0.36 -0.5 588,474 - IAI46_02730 0.36 +1.2 588,480 + IAI46_02730 0.37 -0.3 588,481 - IAI46_02730 0.37 +1.0 588,549 + IAI46_02730 0.46 +1.2 588,550 - IAI46_02730 0.46 -0.4 588,550 - IAI46_02730 0.46 -0.3 588,561 + IAI46_02730 0.48 -0.1 588,562 - IAI46_02730 0.48 -0.0 588,580 - IAI46_02730 0.50 -0.6 588,606 + IAI46_02730 0.54 -0.9 588,610 - IAI46_02730 0.54 +1.7 588,663 + IAI46_02730 0.61 -0.1 588,663 + IAI46_02730 0.61 +0.0 588,663 + IAI46_02730 0.61 -0.3 588,663 + IAI46_02730 0.61 -1.0 588,663 + IAI46_02730 0.61 +0.4 588,663 + IAI46_02730 0.61 -0.2 588,664 - IAI46_02730 0.61 -0.2 588,717 + IAI46_02730 0.68 -0.4 588,717 + IAI46_02730 0.68 -0.2 588,717 + IAI46_02730 0.68 -0.8 588,778 - IAI46_02730 0.76 +0.3 588,789 + IAI46_02730 0.78 +0.7 588,790 - IAI46_02730 0.78 +1.2 589,007 + -1.1 589,015 + +0.6 589,015 + +1.6
Or see this region's nucleotide sequence