Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02600 and IAI46_02605 are separated by 513 nucleotides IAI46_02605 and IAI46_02610 are separated by 1 nucleotides IAI46_02610 and IAI46_02615 are separated by 39 nucleotides
IAI46_02600: IAI46_02600 - L,D-transpeptidase family protein, at 559,845 to 560,765
_02600
IAI46_02605: IAI46_02605 - biopolymer transporter ExbD, at 561,279 to 561,686
_02605
IAI46_02610: IAI46_02610 - energy transducer TonB, at 561,688 to 562,440
_02610
IAI46_02615: IAI46_02615 - TonB-dependent receptor, at 562,480 to 564,720
_02615
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 560.753 kb on + strand at 560.796 kb on - strand at 560.817 kb on - strand at 560.949 kb on + strand at 560.949 kb on + strand at 560.949 kb on + strand at 560.950 kb on - strand at 560.950 kb on - strand at 561.042 kb on - strand at 561.065 kb on + strand at 561.075 kb on + strand at 561.076 kb on - strand at 561.076 kb on - strand at 561.089 kb on - strand at 561.133 kb on - strand at 561.140 kb on + strand at 561.140 kb on + strand at 561.141 kb on - strand at 561.142 kb on + strand at 561.142 kb on + strand at 561.143 kb on - strand at 561.143 kb on - strand at 561.143 kb on - strand at 561.236 kb on + strand at 561.245 kb on + strand at 561.245 kb on + strand at 561.245 kb on + strand at 561.246 kb on - strand at 561.248 kb on - strand at 561.284 kb on + strand at 561.284 kb on + strand at 561.285 kb on - strand at 561.378 kb on - strand, within IAI46_02605 at 561.579 kb on - strand, within IAI46_02605 at 561.691 kb on + strand at 561.691 kb on + strand at 561.691 kb on + strand at 561.691 kb on + strand at 561.691 kb on + strand at 561.691 kb on + strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.692 kb on - strand at 561.799 kb on + strand, within IAI46_02610 at 561.800 kb on - strand, within IAI46_02610 at 562.154 kb on - strand, within IAI46_02610 at 562.300 kb on - strand, within IAI46_02610 at 562.350 kb on + strand, within IAI46_02610 at 562.350 kb on + strand, within IAI46_02610 at 562.451 kb on - strand at 562.507 kb on + strand at 562.507 kb on + strand at 562.508 kb on - strand at 562.585 kb on - strand at 562.708 kb on + strand, within IAI46_02615 at 562.708 kb on + strand, within IAI46_02615 at 562.708 kb on + strand, within IAI46_02615 at 562.709 kb on - strand, within IAI46_02615 at 562.765 kb on + strand, within IAI46_02615 at 562.765 kb on + strand, within IAI46_02615 at 562.765 kb on + strand, within IAI46_02615 at 562.766 kb on - strand, within IAI46_02615 at 562.840 kb on + strand, within IAI46_02615 at 562.850 kb on - strand, within IAI46_02615 at 562.977 kb on + strand, within IAI46_02615 at 563.059 kb on + strand, within IAI46_02615 at 563.059 kb on + strand, within IAI46_02615 at 563.161 kb on + strand, within IAI46_02615 at 563.161 kb on + strand, within IAI46_02615 at 563.161 kb on + strand, within IAI46_02615 at 563.162 kb on - strand, within IAI46_02615 at 563.162 kb on - strand, within IAI46_02615 at 563.162 kb on - strand, within IAI46_02615 at 563.162 kb on - strand, within IAI46_02615 at 563.203 kb on + strand, within IAI46_02615 at 563.204 kb on - strand, within IAI46_02615 at 563.204 kb on - strand, within IAI46_02615 at 563.217 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.227 kb on + strand, within IAI46_02615 at 563.228 kb on - strand, within IAI46_02615 at 563.228 kb on - strand, within IAI46_02615 at 563.228 kb on - strand, within IAI46_02615 at 563.275 kb on + strand, within IAI46_02615 at 563.321 kb on - strand, within IAI46_02615 at 563.324 kb on - strand, within IAI46_02615 at 563.338 kb on - strand, within IAI46_02615 at 563.416 kb on + strand, within IAI46_02615 at 563.417 kb on - strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.419 kb on + strand, within IAI46_02615 at 563.420 kb on - strand, within IAI46_02615 at 563.422 kb on + strand, within IAI46_02615 at 563.422 kb on + strand, within IAI46_02615 at 563.423 kb on - strand, within IAI46_02615
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 560,753 + -0.4 560,796 - -1.4 560,817 - -0.7 560,949 + -0.3 560,949 + -1.2 560,949 + -0.4 560,950 - -0.9 560,950 - +0.6 561,042 - -0.3 561,065 + +0.3 561,075 + -0.4 561,076 - +0.7 561,076 - -0.8 561,089 - -2.9 561,133 - -0.7 561,140 + -0.5 561,140 + -0.7 561,141 - +0.8 561,142 + +0.3 561,142 + -0.0 561,143 - +0.2 561,143 - +0.8 561,143 - -1.4 561,236 + +0.9 561,245 + +1.1 561,245 + -0.3 561,245 + -0.1 561,246 - +0.2 561,248 - +0.2 561,284 + -1.0 561,284 + -0.1 561,285 - -1.1 561,378 - IAI46_02605 0.24 +0.6 561,579 - IAI46_02605 0.74 +1.1 561,691 + -0.2 561,691 + +0.5 561,691 + +0.5 561,691 + +0.2 561,691 + -2.5 561,691 + +0.4 561,692 - +0.6 561,692 - -0.6 561,692 - +0.4 561,692 - -0.0 561,692 - -0.7 561,692 - +1.2 561,692 - +0.7 561,799 + IAI46_02610 0.15 -0.3 561,800 - IAI46_02610 0.15 -0.5 562,154 - IAI46_02610 0.62 +0.6 562,300 - IAI46_02610 0.81 -0.1 562,350 + IAI46_02610 0.88 -0.2 562,350 + IAI46_02610 0.88 -0.1 562,451 - +0.6 562,507 + +0.9 562,507 + -0.8 562,508 - +0.2 562,585 - -0.9 562,708 + IAI46_02615 0.10 +1.2 562,708 + IAI46_02615 0.10 -0.7 562,708 + IAI46_02615 0.10 -0.5 562,709 - IAI46_02615 0.10 -0.1 562,765 + IAI46_02615 0.13 -0.8 562,765 + IAI46_02615 0.13 -1.0 562,765 + IAI46_02615 0.13 -0.2 562,766 - IAI46_02615 0.13 -0.3 562,840 + IAI46_02615 0.16 +0.5 562,850 - IAI46_02615 0.17 -0.5 562,977 + IAI46_02615 0.22 +1.1 563,059 + IAI46_02615 0.26 -0.4 563,059 + IAI46_02615 0.26 -1.8 563,161 + IAI46_02615 0.30 +0.9 563,161 + IAI46_02615 0.30 -0.7 563,161 + IAI46_02615 0.30 -0.9 563,162 - IAI46_02615 0.30 +0.5 563,162 - IAI46_02615 0.30 -0.2 563,162 - IAI46_02615 0.30 -0.1 563,162 - IAI46_02615 0.30 +0.2 563,203 + IAI46_02615 0.32 +0.2 563,204 - IAI46_02615 0.32 -0.1 563,204 - IAI46_02615 0.32 -0.4 563,217 + IAI46_02615 0.33 +0.6 563,227 + IAI46_02615 0.33 -0.2 563,227 + IAI46_02615 0.33 +0.2 563,227 + IAI46_02615 0.33 -0.4 563,227 + IAI46_02615 0.33 +0.4 563,227 + IAI46_02615 0.33 -0.7 563,228 - IAI46_02615 0.33 +1.4 563,228 - IAI46_02615 0.33 +0.6 563,228 - IAI46_02615 0.33 +0.9 563,275 + IAI46_02615 0.35 +0.1 563,321 - IAI46_02615 0.38 -0.4 563,324 - IAI46_02615 0.38 +0.3 563,338 - IAI46_02615 0.38 -0.9 563,416 + IAI46_02615 0.42 -0.9 563,417 - IAI46_02615 0.42 -0.2 563,419 + IAI46_02615 0.42 -0.6 563,419 + IAI46_02615 0.42 +0.3 563,419 + IAI46_02615 0.42 -0.1 563,419 + IAI46_02615 0.42 -0.4 563,419 + IAI46_02615 0.42 +0.1 563,419 + IAI46_02615 0.42 -0.3 563,420 - IAI46_02615 0.42 +0.7 563,422 + IAI46_02615 0.42 -0.2 563,422 + IAI46_02615 0.42 +0.8 563,423 - IAI46_02615 0.42 -0.2
Or see this region's nucleotide sequence