Strain Fitness in Serratia liquefaciens MT49 around IAI46_02110

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02100 and IAI46_02105 are separated by 2 nucleotidesIAI46_02105 and IAI46_02110 are separated by 0 nucleotidesIAI46_02110 and IAI46_02115 are separated by 257 nucleotides IAI46_02100: IAI46_02100 - phosphonate C-P lyase system protein PhnH, at 446,852 to 447,433 _02100 IAI46_02105: IAI46_02105 - phosphonate C-P lyase system protein PhnG, at 447,436 to 447,879 _02105 IAI46_02110: IAI46_02110 - phosphonate metabolism transcriptional regulator PhnF, at 447,880 to 448,608 _02110 IAI46_02115: IAI46_02115 - permease, at 448,866 to 449,924 _02115 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1at 446.950 kb on + strand, within IAI46_02100at 446.958 kb on + strand, within IAI46_02100at 446.959 kb on - strand, within IAI46_02100at 446.959 kb on - strand, within IAI46_02100at 447.052 kb on + strand, within IAI46_02100at 447.053 kb on - strand, within IAI46_02100at 447.053 kb on - strand, within IAI46_02100at 447.056 kb on + strand, within IAI46_02100at 447.057 kb on - strand, within IAI46_02100at 447.057 kb on - strand, within IAI46_02100at 447.057 kb on - strand, within IAI46_02100at 447.425 kb on + strandat 447.425 kb on + strandat 447.425 kb on + strandat 447.425 kb on + strandat 447.426 kb on - strandat 447.437 kb on + strandat 447.438 kb on - strandat 447.536 kb on - strand, within IAI46_02105at 447.536 kb on - strand, within IAI46_02105at 447.536 kb on - strand, within IAI46_02105at 447.536 kb on - strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.635 kb on + strand, within IAI46_02105at 447.636 kb on - strand, within IAI46_02105at 447.636 kb on - strand, within IAI46_02105at 447.636 kb on - strand, within IAI46_02105at 447.636 kb on - strand, within IAI46_02105at 447.641 kb on + strand, within IAI46_02105at 447.647 kb on + strand, within IAI46_02105at 447.776 kb on + strand, within IAI46_02105at 447.842 kb on - strandat 447.869 kb on - strandat 447.869 kb on - strandat 448.161 kb on - strand, within IAI46_02110at 448.161 kb on - strand, within IAI46_02110at 448.367 kb on + strand, within IAI46_02110at 448.472 kb on + strand, within IAI46_02110at 448.472 kb on + strand, within IAI46_02110at 448.472 kb on + strand, within IAI46_02110at 448.473 kb on - strand, within IAI46_02110at 448.505 kb on + strand, within IAI46_02110at 448.609 kb on - strandat 448.630 kb on + strandat 448.653 kb on + strandat 448.666 kb on + strandat 448.667 kb on - strandat 448.667 kb on - strandat 448.667 kb on - strandat 448.701 kb on + strandat 448.782 kb on - strandat 448.782 kb on - strandat 448.824 kb on - strandat 448.834 kb on + strandat 448.835 kb on - strandat 448.860 kb on - strandat 448.860 kb on - strandat 448.959 kb on + strandat 448.959 kb on + strandat 448.960 kb on - strandat 448.960 kb on - strandat 448.962 kb on + strandat 448.963 kb on - strandat 448.963 kb on - strandat 448.963 kb on - strandat 448.963 kb on - strandat 448.980 kb on + strand, within IAI46_02115at 448.980 kb on + strand, within IAI46_02115at 448.981 kb on - strand, within IAI46_02115at 448.981 kb on - strand, within IAI46_02115at 449.076 kb on + strand, within IAI46_02115at 449.077 kb on - strand, within IAI46_02115at 449.088 kb on + strand, within IAI46_02115at 449.102 kb on - strand, within IAI46_02115at 449.246 kb on + strand, within IAI46_02115at 449.246 kb on + strand, within IAI46_02115at 449.246 kb on + strand, within IAI46_02115at 449.246 kb on + strand, within IAI46_02115at 449.246 kb on + strand, within IAI46_02115at 449.247 kb on - strand, within IAI46_02115at 449.266 kb on + strand, within IAI46_02115at 449.266 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.576 kb on - strand, within IAI46_02115at 449.576 kb on - strand, within IAI46_02115at 449.576 kb on - strand, within IAI46_02115at 449.584 kb on - strand, within IAI46_02115

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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446,950 + IAI46_02100 0.17 +0.6
446,958 + IAI46_02100 0.18 +0.8
446,959 - IAI46_02100 0.18 -0.4
446,959 - IAI46_02100 0.18 +0.2
447,052 + IAI46_02100 0.34 +1.1
447,053 - IAI46_02100 0.35 -0.6
447,053 - IAI46_02100 0.35 -0.2
447,056 + IAI46_02100 0.35 -0.0
447,057 - IAI46_02100 0.35 +0.4
447,057 - IAI46_02100 0.35 -0.9
447,057 - IAI46_02100 0.35 -0.4
447,425 + -0.2
447,425 + -0.1
447,425 + +0.8
447,425 + +0.5
447,426 - -0.3
447,437 + +0.2
447,438 - +0.1
447,536 - IAI46_02105 0.23 -0.8
447,536 - IAI46_02105 0.23 +0.4
447,536 - IAI46_02105 0.23 +0.1
447,536 - IAI46_02105 0.23 +0.0
447,635 + IAI46_02105 0.45 +0.1
447,635 + IAI46_02105 0.45 -0.4
447,635 + IAI46_02105 0.45 -1.3
447,635 + IAI46_02105 0.45 +1.1
447,635 + IAI46_02105 0.45 +0.3
447,635 + IAI46_02105 0.45 +0.6
447,635 + IAI46_02105 0.45 -0.1
447,635 + IAI46_02105 0.45 -0.9
447,636 - IAI46_02105 0.45 -1.0
447,636 - IAI46_02105 0.45 +0.2
447,636 - IAI46_02105 0.45 -0.4
447,636 - IAI46_02105 0.45 -0.4
447,641 + IAI46_02105 0.46 -0.8
447,647 + IAI46_02105 0.48 +0.2
447,776 + IAI46_02105 0.77 +1.1
447,842 - -0.4
447,869 - +0.4
447,869 - +0.2
448,161 - IAI46_02110 0.39 -0.5
448,161 - IAI46_02110 0.39 -0.0
448,367 + IAI46_02110 0.67 -0.9
448,472 + IAI46_02110 0.81 -0.6
448,472 + IAI46_02110 0.81 -0.7
448,472 + IAI46_02110 0.81 -2.0
448,473 - IAI46_02110 0.81 +0.5
448,505 + IAI46_02110 0.86 -0.0
448,609 - -0.2
448,630 + -0.5
448,653 + -0.2
448,666 + -0.6
448,667 - -0.2
448,667 - -0.2
448,667 - -0.2
448,701 + -0.2
448,782 - -0.3
448,782 - -0.9
448,824 - -0.2
448,834 + +0.6
448,835 - +1.4
448,860 - +0.8
448,860 - +0.0
448,959 + -0.3
448,959 + -0.6
448,960 - +0.6
448,960 - -0.6
448,962 + -0.7
448,963 - +0.3
448,963 - +1.4
448,963 - +0.6
448,963 - +0.7
448,980 + IAI46_02115 0.11 +0.8
448,980 + IAI46_02115 0.11 +0.8
448,981 - IAI46_02115 0.11 -0.0
448,981 - IAI46_02115 0.11 +1.3
449,076 + IAI46_02115 0.20 +0.7
449,077 - IAI46_02115 0.20 -0.1
449,088 + IAI46_02115 0.21 +0.9
449,102 - IAI46_02115 0.22 +1.1
449,246 + IAI46_02115 0.36 -1.3
449,246 + IAI46_02115 0.36 +0.1
449,246 + IAI46_02115 0.36 +0.6
449,246 + IAI46_02115 0.36 -0.6
449,246 + IAI46_02115 0.36 -0.0
449,247 - IAI46_02115 0.36 -0.8
449,266 + IAI46_02115 0.38 -0.1
449,266 + IAI46_02115 0.38 +0.6
449,575 + IAI46_02115 0.67 +0.5
449,575 + IAI46_02115 0.67 -0.4
449,575 + IAI46_02115 0.67 -0.0
449,575 + IAI46_02115 0.67 +0.8
449,575 + IAI46_02115 0.67 +0.7
449,576 - IAI46_02115 0.67 +0.5
449,576 - IAI46_02115 0.67 -0.3
449,576 - IAI46_02115 0.67 +0.3
449,584 - IAI46_02115 0.68 +0.4

Or see this region's nucleotide sequence