Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02050 and IAI46_02055 are separated by 47 nucleotides IAI46_02055 and IAI46_02060 overlap by 50 nucleotides IAI46_02060 and IAI46_02065 are separated by 14 nucleotides IAI46_02065 and IAI46_02070 overlap by 4 nucleotides
IAI46_02050: IAI46_02050 - YhbP family protein, at 439,233 to 439,667
_02050
IAI46_02055: IAI46_02055 - NAD(P)H-binding protein, at 439,715 to 440,353
_02055
IAI46_02060: IAI46_02060 - phosphonate metabolism protein PhnP, at 440,304 to 441,086
_02060
IAI46_02065: IAI46_02065 - acetyltransferase, at 441,101 to 441,703
_02065
IAI46_02070: IAI46_02070 - ribose 1,5-bisphosphokinase, at 441,700 to 442,269
_02070
Position (kb) 440
441
442 Strain fitness (log2 ratio) -1
0
1 at 439.319 kb on + strand, within IAI46_02050 at 439.319 kb on + strand, within IAI46_02050 at 439.319 kb on + strand, within IAI46_02050 at 439.320 kb on - strand, within IAI46_02050 at 439.320 kb on - strand, within IAI46_02050 at 439.320 kb on - strand, within IAI46_02050 at 439.342 kb on - strand, within IAI46_02050 at 439.547 kb on + strand, within IAI46_02050 at 439.548 kb on - strand, within IAI46_02050 at 439.626 kb on - strand at 439.680 kb on - strand at 439.714 kb on + strand at 439.715 kb on - strand at 439.907 kb on - strand, within IAI46_02055 at 439.968 kb on - strand, within IAI46_02055 at 440.068 kb on + strand, within IAI46_02055 at 440.068 kb on + strand, within IAI46_02055 at 440.068 kb on + strand, within IAI46_02055 at 440.069 kb on - strand, within IAI46_02055 at 440.069 kb on - strand, within IAI46_02055 at 440.069 kb on - strand, within IAI46_02055 at 440.079 kb on - strand, within IAI46_02055 at 440.081 kb on - strand, within IAI46_02055 at 440.160 kb on + strand, within IAI46_02055 at 440.215 kb on + strand, within IAI46_02055 at 440.436 kb on + strand, within IAI46_02060 at 440.437 kb on - strand, within IAI46_02060 at 440.437 kb on - strand, within IAI46_02060 at 440.442 kb on - strand, within IAI46_02060 at 440.566 kb on - strand, within IAI46_02060 at 440.612 kb on - strand, within IAI46_02060 at 440.612 kb on - strand, within IAI46_02060 at 440.645 kb on - strand, within IAI46_02060 at 440.797 kb on + strand, within IAI46_02060 at 440.839 kb on - strand, within IAI46_02060 at 440.847 kb on + strand, within IAI46_02060 at 440.847 kb on + strand, within IAI46_02060 at 440.848 kb on - strand, within IAI46_02060 at 441.105 kb on - strand at 441.105 kb on - strand at 441.105 kb on - strand at 441.108 kb on + strand at 441.109 kb on - strand at 441.109 kb on - strand at 441.267 kb on + strand, within IAI46_02065 at 441.268 kb on - strand, within IAI46_02065 at 441.438 kb on + strand, within IAI46_02065 at 441.438 kb on + strand, within IAI46_02065 at 441.438 kb on + strand, within IAI46_02065 at 441.439 kb on - strand, within IAI46_02065 at 441.476 kb on - strand, within IAI46_02065 at 441.483 kb on + strand, within IAI46_02065 at 441.483 kb on + strand, within IAI46_02065 at 441.508 kb on + strand, within IAI46_02065 at 441.516 kb on + strand, within IAI46_02065 at 441.516 kb on + strand, within IAI46_02065 at 441.517 kb on - strand, within IAI46_02065 at 441.517 kb on - strand, within IAI46_02065 at 441.517 kb on - strand, within IAI46_02065 at 441.517 kb on - strand, within IAI46_02065 at 441.577 kb on + strand, within IAI46_02065 at 441.578 kb on - strand, within IAI46_02065 at 441.579 kb on + strand, within IAI46_02065 at 441.579 kb on + strand, within IAI46_02065 at 441.579 kb on + strand, within IAI46_02065 at 441.580 kb on - strand, within IAI46_02065 at 441.580 kb on - strand, within IAI46_02065 at 441.580 kb on - strand, within IAI46_02065 at 441.580 kb on - strand, within IAI46_02065 at 441.580 kb on - strand, within IAI46_02065 at 441.580 kb on - strand, within IAI46_02065 at 441.580 kb on - strand, within IAI46_02065 at 441.580 kb on - strand, within IAI46_02065 at 441.585 kb on + strand, within IAI46_02065 at 441.586 kb on - strand, within IAI46_02065 at 441.632 kb on + strand, within IAI46_02065 at 441.632 kb on + strand, within IAI46_02065 at 441.633 kb on - strand, within IAI46_02065 at 441.633 kb on - strand, within IAI46_02065 at 441.633 kb on - strand, within IAI46_02065 at 441.633 kb on - strand, within IAI46_02065 at 441.633 kb on - strand, within IAI46_02065 at 441.633 kb on - strand, within IAI46_02065 at 441.633 kb on - strand, within IAI46_02065 at 441.636 kb on + strand, within IAI46_02065 at 441.636 kb on + strand, within IAI46_02065 at 441.636 kb on + strand, within IAI46_02065 at 441.636 kb on + strand, within IAI46_02065 at 441.637 kb on - strand, within IAI46_02065 at 441.645 kb on - strand at 441.658 kb on + strand at 441.751 kb on + strand at 441.752 kb on - strand at 441.903 kb on + strand, within IAI46_02070 at 441.903 kb on + strand, within IAI46_02070 at 441.904 kb on - strand, within IAI46_02070 at 441.910 kb on - strand, within IAI46_02070 at 442.043 kb on + strand, within IAI46_02070 at 442.043 kb on + strand, within IAI46_02070 at 442.044 kb on - strand, within IAI46_02070
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 439,319 + IAI46_02050 0.20 +1.3 439,319 + IAI46_02050 0.20 -0.4 439,319 + IAI46_02050 0.20 +1.3 439,320 - IAI46_02050 0.20 +1.3 439,320 - IAI46_02050 0.20 +0.3 439,320 - IAI46_02050 0.20 +0.3 439,342 - IAI46_02050 0.25 -0.4 439,547 + IAI46_02050 0.72 +1.3 439,548 - IAI46_02050 0.72 +0.3 439,626 - +1.4 439,680 - -0.0 439,714 + +0.8 439,715 - -0.5 439,907 - IAI46_02055 0.30 -1.1 439,968 - IAI46_02055 0.40 -0.4 440,068 + IAI46_02055 0.55 +0.1 440,068 + IAI46_02055 0.55 +0.7 440,068 + IAI46_02055 0.55 +0.1 440,069 - IAI46_02055 0.55 +0.8 440,069 - IAI46_02055 0.55 +0.2 440,069 - IAI46_02055 0.55 -0.9 440,079 - IAI46_02055 0.57 -0.7 440,081 - IAI46_02055 0.57 -1.4 440,160 + IAI46_02055 0.70 +0.3 440,215 + IAI46_02055 0.78 +1.6 440,436 + IAI46_02060 0.17 +0.6 440,437 - IAI46_02060 0.17 -1.0 440,437 - IAI46_02060 0.17 -0.1 440,442 - IAI46_02060 0.18 +0.1 440,566 - IAI46_02060 0.33 -0.7 440,612 - IAI46_02060 0.39 -0.4 440,612 - IAI46_02060 0.39 -0.1 440,645 - IAI46_02060 0.44 +0.7 440,797 + IAI46_02060 0.63 +0.1 440,839 - IAI46_02060 0.68 +0.5 440,847 + IAI46_02060 0.69 -0.8 440,847 + IAI46_02060 0.69 +0.7 440,848 - IAI46_02060 0.69 -0.5 441,105 - -0.1 441,105 - -0.6 441,105 - +1.2 441,108 + -1.2 441,109 - -1.7 441,109 - +0.1 441,267 + IAI46_02065 0.28 -0.5 441,268 - IAI46_02065 0.28 -0.5 441,438 + IAI46_02065 0.56 -0.1 441,438 + IAI46_02065 0.56 -0.4 441,438 + IAI46_02065 0.56 +0.7 441,439 - IAI46_02065 0.56 +0.5 441,476 - IAI46_02065 0.62 -0.1 441,483 + IAI46_02065 0.63 +0.1 441,483 + IAI46_02065 0.63 -0.8 441,508 + IAI46_02065 0.67 +0.4 441,516 + IAI46_02065 0.69 +0.7 441,516 + IAI46_02065 0.69 +0.4 441,517 - IAI46_02065 0.69 -0.5 441,517 - IAI46_02065 0.69 +0.2 441,517 - IAI46_02065 0.69 -0.6 441,517 - IAI46_02065 0.69 -0.5 441,577 + IAI46_02065 0.79 -0.3 441,578 - IAI46_02065 0.79 -0.1 441,579 + IAI46_02065 0.79 -0.3 441,579 + IAI46_02065 0.79 +0.5 441,579 + IAI46_02065 0.79 -0.2 441,580 - IAI46_02065 0.79 +0.8 441,580 - IAI46_02065 0.79 +0.0 441,580 - IAI46_02065 0.79 +0.4 441,580 - IAI46_02065 0.79 -0.2 441,580 - IAI46_02065 0.79 -0.1 441,580 - IAI46_02065 0.79 -0.0 441,580 - IAI46_02065 0.79 +0.6 441,580 - IAI46_02065 0.79 -0.3 441,585 + IAI46_02065 0.80 -0.1 441,586 - IAI46_02065 0.80 -0.0 441,632 + IAI46_02065 0.88 +1.0 441,632 + IAI46_02065 0.88 -1.3 441,633 - IAI46_02065 0.88 -0.0 441,633 - IAI46_02065 0.88 -1.6 441,633 - IAI46_02065 0.88 +0.5 441,633 - IAI46_02065 0.88 -0.9 441,633 - IAI46_02065 0.88 -0.8 441,633 - IAI46_02065 0.88 -0.5 441,633 - IAI46_02065 0.88 +0.4 441,636 + IAI46_02065 0.89 -1.1 441,636 + IAI46_02065 0.89 +0.5 441,636 + IAI46_02065 0.89 +1.2 441,636 + IAI46_02065 0.89 +0.2 441,637 - IAI46_02065 0.89 +0.4 441,645 - +0.5 441,658 + -0.3 441,751 + -0.6 441,752 - +0.4 441,903 + IAI46_02070 0.36 +0.5 441,903 + IAI46_02070 0.36 -1.1 441,904 - IAI46_02070 0.36 +0.1 441,910 - IAI46_02070 0.37 -0.5 442,043 + IAI46_02070 0.60 -0.3 442,043 + IAI46_02070 0.60 +0.9 442,044 - IAI46_02070 0.60 +0.7
Or see this region's nucleotide sequence