Strain Fitness in Serratia liquefaciens MT49 around IAI46_01610

Experiment: Cadmium acetate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_01600 and IAI46_01605 are separated by 14 nucleotidesIAI46_01605 and IAI46_01610 are separated by 7 nucleotidesIAI46_01610 and IAI46_01615 are separated by 26 nucleotides IAI46_01600: IAI46_01600 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 349,965 to 351,476 _01600 IAI46_01605: IAI46_01605 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 351,491 to 351,961 _01605 IAI46_01610: IAI46_01610 - N-acetylmuramoyl-L-alanine amidase AmiB, at 351,969 to 353,765 _01610 IAI46_01615: IAI46_01615 - DNA mismatch repair endonuclease MutL, at 353,792 to 355,666 _01615 Position (kb) 351 352 353 354Strain fitness (log2 ratio) -2 -1 0 1 2at 350.990 kb on - strand, within IAI46_01600at 351.006 kb on - strand, within IAI46_01600at 351.040 kb on + strand, within IAI46_01600at 351.040 kb on + strand, within IAI46_01600at 351.041 kb on - strand, within IAI46_01600at 351.049 kb on + strand, within IAI46_01600at 351.049 kb on + strand, within IAI46_01600at 351.148 kb on + strand, within IAI46_01600at 351.162 kb on - strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.210 kb on - strand, within IAI46_01600at 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.340 kb on - strandat 351.409 kb on + strandat 351.433 kb on + strandat 351.450 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.474 kb on + strandat 351.478 kb on + strandat 351.940 kb on + strandat 351.940 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.992 kb on - strandat 351.997 kb on + strandat 352.070 kb on + strandat 352.071 kb on - strandat 352.115 kb on + strandat 352.131 kb on + strandat 352.168 kb on + strand, within IAI46_01610at 352.276 kb on + strand, within IAI46_01610at 352.276 kb on + strand, within IAI46_01610at 352.277 kb on - strand, within IAI46_01610at 352.344 kb on + strand, within IAI46_01610at 352.345 kb on - strand, within IAI46_01610at 352.345 kb on - strand, within IAI46_01610at 352.347 kb on - strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.389 kb on - strand, within IAI46_01610at 352.389 kb on - strand, within IAI46_01610at 352.393 kb on + strand, within IAI46_01610at 352.393 kb on + strand, within IAI46_01610at 352.443 kb on - strand, within IAI46_01610at 352.443 kb on - strand, within IAI46_01610at 352.526 kb on + strand, within IAI46_01610at 352.532 kb on + strand, within IAI46_01610at 352.688 kb on + strand, within IAI46_01610at 352.689 kb on - strand, within IAI46_01610at 352.689 kb on - strand, within IAI46_01610at 352.767 kb on + strand, within IAI46_01610at 352.768 kb on - strand, within IAI46_01610at 353.001 kb on + strand, within IAI46_01610at 353.001 kb on + strand, within IAI46_01610at 353.002 kb on - strand, within IAI46_01610at 353.056 kb on - strand, within IAI46_01610at 353.069 kb on - strand, within IAI46_01610at 353.069 kb on - strand, within IAI46_01610at 353.109 kb on - strand, within IAI46_01610at 353.109 kb on - strand, within IAI46_01610at 353.187 kb on - strand, within IAI46_01610at 353.187 kb on - strand, within IAI46_01610at 353.187 kb on - strand, within IAI46_01610at 353.192 kb on + strand, within IAI46_01610at 353.195 kb on + strand, within IAI46_01610at 353.195 kb on + strand, within IAI46_01610at 353.196 kb on - strand, within IAI46_01610at 353.196 kb on - strand, within IAI46_01610at 353.196 kb on - strand, within IAI46_01610at 353.293 kb on + strand, within IAI46_01610at 353.418 kb on - strand, within IAI46_01610at 353.418 kb on - strand, within IAI46_01610at 353.418 kb on - strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.549 kb on + strand, within IAI46_01610at 353.550 kb on - strand, within IAI46_01610at 353.586 kb on - strandat 353.586 kb on - strandat 353.648 kb on + strandat 353.648 kb on + strandat 353.649 kb on - strandat 353.773 kb on - strandat 353.775 kb on + strandat 353.775 kb on + strandat 353.776 kb on - strandat 353.776 kb on - strandat 353.776 kb on - strandat 353.776 kb on - strandat 353.779 kb on + strandat 353.779 kb on + strandat 353.779 kb on + strandat 353.780 kb on - strandat 353.780 kb on - strandat 353.780 kb on - strandat 353.780 kb on - strandat 353.808 kb on + strandat 353.809 kb on - strandat 353.921 kb on - strandat 353.921 kb on - strandat 354.025 kb on + strand, within IAI46_01615at 354.025 kb on + strand, within IAI46_01615at 354.214 kb on - strand, within IAI46_01615at 354.246 kb on - strand, within IAI46_01615at 354.246 kb on - strand, within IAI46_01615at 354.246 kb on - strand, within IAI46_01615at 354.312 kb on + strand, within IAI46_01615at 354.312 kb on + strand, within IAI46_01615at 354.312 kb on + strand, within IAI46_01615at 354.313 kb on - strand, within IAI46_01615at 354.313 kb on - strand, within IAI46_01615at 354.414 kb on - strand, within IAI46_01615at 354.414 kb on - strand, within IAI46_01615at 354.414 kb on - strand, within IAI46_01615at 354.551 kb on + strand, within IAI46_01615at 354.551 kb on + strand, within IAI46_01615at 354.552 kb on - strand, within IAI46_01615at 354.552 kb on - strand, within IAI46_01615at 354.552 kb on - strand, within IAI46_01615at 354.552 kb on - strand, within IAI46_01615at 354.557 kb on + strand, within IAI46_01615at 354.557 kb on + strand, within IAI46_01615at 354.557 kb on + strand, within IAI46_01615at 354.558 kb on - strand, within IAI46_01615at 354.558 kb on - strand, within IAI46_01615at 354.558 kb on - strand, within IAI46_01615at 354.614 kb on + strand, within IAI46_01615at 354.615 kb on - strand, within IAI46_01615at 354.650 kb on + strand, within IAI46_01615at 354.651 kb on - strand, within IAI46_01615at 354.651 kb on - strand, within IAI46_01615at 354.654 kb on + strand, within IAI46_01615at 354.654 kb on + strand, within IAI46_01615at 354.654 kb on + strand, within IAI46_01615at 354.655 kb on - strand, within IAI46_01615at 354.655 kb on - strand, within IAI46_01615at 354.659 kb on + strand, within IAI46_01615at 354.659 kb on + strand, within IAI46_01615at 354.685 kb on - strand, within IAI46_01615at 354.742 kb on - strand, within IAI46_01615at 354.751 kb on + strand, within IAI46_01615at 354.751 kb on + strand, within IAI46_01615at 354.752 kb on - strand, within IAI46_01615at 354.752 kb on - strand, within IAI46_01615at 354.755 kb on + strand, within IAI46_01615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
remove
350,990 - IAI46_01600 0.68 -0.1
351,006 - IAI46_01600 0.69 -0.7
351,040 + IAI46_01600 0.71 +0.8
351,040 + IAI46_01600 0.71 +0.6
351,041 - IAI46_01600 0.71 +0.9
351,049 + IAI46_01600 0.72 +0.3
351,049 + IAI46_01600 0.72 -0.4
351,148 + IAI46_01600 0.78 +0.1
351,162 - IAI46_01600 0.79 -0.9
351,177 + IAI46_01600 0.80 +0.9
351,177 + IAI46_01600 0.80 +0.1
351,177 + IAI46_01600 0.80 -0.1
351,210 - IAI46_01600 0.82 -0.5
351,339 + +0.3
351,339 + -0.2
351,339 + +0.7
351,339 + +0.8
351,339 + -0.1
351,339 + +0.0
351,340 - +0.3
351,409 + -0.0
351,433 + -0.0
351,450 + -0.2
351,453 + +0.5
351,453 + -0.5
351,453 + -0.1
351,453 + +1.1
351,453 + -1.5
351,453 + -0.2
351,453 + -0.4
351,453 + +0.3
351,453 + -0.5
351,474 + +1.8
351,478 + -1.7
351,940 + +1.0
351,940 + +0.1
351,975 + -0.0
351,975 + -1.2
351,975 + -1.0
351,975 + -0.0
351,976 - -0.2
351,976 - +1.0
351,976 - +0.3
351,976 - -0.2
351,976 - +0.2
351,976 - -0.1
351,976 - +0.2
351,992 - -0.1
351,997 + +0.3
352,070 + -0.0
352,071 - +0.9
352,115 + +0.0
352,131 + -0.2
352,168 + IAI46_01610 0.11 +0.1
352,276 + IAI46_01610 0.17 -0.0
352,276 + IAI46_01610 0.17 +1.2
352,277 - IAI46_01610 0.17 -0.1
352,344 + IAI46_01610 0.21 -0.8
352,345 - IAI46_01610 0.21 -0.4
352,345 - IAI46_01610 0.21 +0.8
352,347 - IAI46_01610 0.21 +0.0
352,388 + IAI46_01610 0.23 -0.5
352,388 + IAI46_01610 0.23 -0.3
352,388 + IAI46_01610 0.23 -0.1
352,389 - IAI46_01610 0.23 -0.3
352,389 - IAI46_01610 0.23 -0.3
352,393 + IAI46_01610 0.24 +0.7
352,393 + IAI46_01610 0.24 +0.0
352,443 - IAI46_01610 0.26 +0.0
352,443 - IAI46_01610 0.26 -0.4
352,526 + IAI46_01610 0.31 -0.8
352,532 + IAI46_01610 0.31 -0.2
352,688 + IAI46_01610 0.40 +0.7
352,689 - IAI46_01610 0.40 -0.2
352,689 - IAI46_01610 0.40 +0.1
352,767 + IAI46_01610 0.44 +1.3
352,768 - IAI46_01610 0.44 +0.1
353,001 + IAI46_01610 0.57 -0.2
353,001 + IAI46_01610 0.57 -0.2
353,002 - IAI46_01610 0.57 -1.5
353,056 - IAI46_01610 0.60 -0.3
353,069 - IAI46_01610 0.61 -0.4
353,069 - IAI46_01610 0.61 -1.7
353,109 - IAI46_01610 0.63 +0.2
353,109 - IAI46_01610 0.63 +0.4
353,187 - IAI46_01610 0.68 -0.9
353,187 - IAI46_01610 0.68 -0.5
353,187 - IAI46_01610 0.68 -1.1
353,192 + IAI46_01610 0.68 +0.2
353,195 + IAI46_01610 0.68 -0.2
353,195 + IAI46_01610 0.68 +0.8
353,196 - IAI46_01610 0.68 +0.2
353,196 - IAI46_01610 0.68 -1.4
353,196 - IAI46_01610 0.68 +0.5
353,293 + IAI46_01610 0.74 -0.7
353,418 - IAI46_01610 0.81 -0.2
353,418 - IAI46_01610 0.81 +0.1
353,418 - IAI46_01610 0.81 -0.6
353,475 + IAI46_01610 0.84 -0.3
353,475 + IAI46_01610 0.84 +0.0
353,475 + IAI46_01610 0.84 +1.2
353,475 + IAI46_01610 0.84 +0.2
353,475 + IAI46_01610 0.84 +0.1
353,476 - IAI46_01610 0.84 -1.0
353,476 - IAI46_01610 0.84 +0.9
353,476 - IAI46_01610 0.84 +0.0
353,476 - IAI46_01610 0.84 +0.3
353,476 - IAI46_01610 0.84 -0.0
353,476 - IAI46_01610 0.84 +0.3
353,476 - IAI46_01610 0.84 +0.4
353,476 - IAI46_01610 0.84 +0.3
353,549 + IAI46_01610 0.88 -0.1
353,550 - IAI46_01610 0.88 -0.5
353,586 - +0.4
353,586 - -0.1
353,648 + +0.2
353,648 + -0.0
353,649 - -0.9
353,773 - -0.9
353,775 + -0.3
353,775 + -0.5
353,776 - -1.3
353,776 - -0.9
353,776 - +0.1
353,776 - +0.2
353,779 + -1.1
353,779 + +0.0
353,779 + -0.3
353,780 - -0.5
353,780 - -0.6
353,780 - +0.2
353,780 - +0.2
353,808 + -0.9
353,809 - -0.0
353,921 - -0.1
353,921 - -0.1
354,025 + IAI46_01615 0.12 -0.0
354,025 + IAI46_01615 0.12 +0.2
354,214 - IAI46_01615 0.23 +0.8
354,246 - IAI46_01615 0.24 -1.2
354,246 - IAI46_01615 0.24 +0.8
354,246 - IAI46_01615 0.24 -1.1
354,312 + IAI46_01615 0.28 +0.1
354,312 + IAI46_01615 0.28 +0.5
354,312 + IAI46_01615 0.28 +1.1
354,313 - IAI46_01615 0.28 +1.0
354,313 - IAI46_01615 0.28 -0.1
354,414 - IAI46_01615 0.33 -0.0
354,414 - IAI46_01615 0.33 +0.4
354,414 - IAI46_01615 0.33 +0.6
354,551 + IAI46_01615 0.40 +0.2
354,551 + IAI46_01615 0.40 +0.1
354,552 - IAI46_01615 0.41 +0.7
354,552 - IAI46_01615 0.41 -0.1
354,552 - IAI46_01615 0.41 -0.3
354,552 - IAI46_01615 0.41 -0.4
354,557 + IAI46_01615 0.41 -0.4
354,557 + IAI46_01615 0.41 +0.5
354,557 + IAI46_01615 0.41 -0.4
354,558 - IAI46_01615 0.41 +1.0
354,558 - IAI46_01615 0.41 +0.5
354,558 - IAI46_01615 0.41 -0.5
354,614 + IAI46_01615 0.44 +0.2
354,615 - IAI46_01615 0.44 +0.4
354,650 + IAI46_01615 0.46 +1.1
354,651 - IAI46_01615 0.46 +0.1
354,651 - IAI46_01615 0.46 -0.9
354,654 + IAI46_01615 0.46 -0.6
354,654 + IAI46_01615 0.46 +0.4
354,654 + IAI46_01615 0.46 +0.5
354,655 - IAI46_01615 0.46 -0.3
354,655 - IAI46_01615 0.46 +0.4
354,659 + IAI46_01615 0.46 +0.2
354,659 + IAI46_01615 0.46 -0.1
354,685 - IAI46_01615 0.48 -0.5
354,742 - IAI46_01615 0.51 -0.4
354,751 + IAI46_01615 0.51 -0.8
354,751 + IAI46_01615 0.51 -1.8
354,752 - IAI46_01615 0.51 -0.1
354,752 - IAI46_01615 0.51 +0.2
354,755 + IAI46_01615 0.51 +0.5

Or see this region's nucleotide sequence