Strain Fitness in Serratia liquefaciens MT49 around IAI46_01435

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01425 and IAI46_01430 are separated by 141 nucleotidesIAI46_01430 and IAI46_01435 are separated by 12 nucleotidesIAI46_01435 and IAI46_01440 are separated by 12 nucleotides IAI46_01425: IAI46_01425 - sulfite exporter TauE/SafE family protein, at 313,879 to 314,625 _01425 IAI46_01430: IAI46_01430 - molecular chaperone TorD, at 314,767 to 315,408 _01430 IAI46_01435: IAI46_01435 - trimethylamine-N-oxide reductase TorA, at 315,421 to 317,955 _01435 IAI46_01440: IAI46_01440 - pentaheme c-type cytochrome TorC, at 317,968 to 319,131 _01440 Position (kb) 315 316 317 318Strain fitness (log2 ratio) -2 -1 0 1 2at 314.452 kb on + strand, within IAI46_01425at 314.453 kb on - strand, within IAI46_01425at 314.468 kb on + strand, within IAI46_01425at 314.469 kb on - strand, within IAI46_01425at 314.469 kb on - strand, within IAI46_01425at 314.475 kb on - strand, within IAI46_01425at 314.515 kb on - strand, within IAI46_01425at 314.515 kb on - strand, within IAI46_01425at 314.567 kb on + strandat 314.567 kb on + strandat 314.610 kb on + strandat 314.611 kb on - strandat 314.614 kb on + strandat 314.682 kb on - strandat 314.708 kb on + strandat 314.746 kb on + strandat 314.746 kb on + strandat 314.755 kb on + strandat 314.813 kb on - strandat 314.831 kb on + strandat 314.831 kb on + strandat 314.974 kb on + strand, within IAI46_01430at 314.974 kb on + strand, within IAI46_01430at 314.974 kb on + strand, within IAI46_01430at 314.975 kb on - strand, within IAI46_01430at 314.975 kb on - strand, within IAI46_01430at 314.995 kb on + strand, within IAI46_01430at 314.996 kb on - strand, within IAI46_01430at 315.084 kb on + strand, within IAI46_01430at 315.107 kb on + strand, within IAI46_01430at 315.108 kb on - strand, within IAI46_01430at 315.108 kb on - strand, within IAI46_01430at 315.120 kb on - strand, within IAI46_01430at 315.269 kb on - strand, within IAI46_01430at 315.324 kb on + strand, within IAI46_01430at 315.359 kb on + strandat 315.359 kb on + strandat 315.360 kb on - strandat 315.360 kb on - strandat 315.360 kb on - strandat 315.371 kb on + strandat 315.371 kb on + strandat 315.372 kb on - strandat 315.396 kb on + strandat 315.455 kb on + strandat 315.455 kb on + strandat 315.520 kb on - strandat 315.520 kb on - strandat 315.598 kb on + strandat 315.656 kb on + strandat 315.657 kb on - strandat 315.696 kb on - strand, within IAI46_01435at 315.710 kb on - strand, within IAI46_01435at 315.753 kb on + strand, within IAI46_01435at 315.766 kb on - strand, within IAI46_01435at 315.802 kb on - strand, within IAI46_01435at 315.802 kb on - strand, within IAI46_01435at 315.805 kb on + strand, within IAI46_01435at 315.816 kb on + strand, within IAI46_01435at 315.830 kb on + strand, within IAI46_01435at 315.889 kb on + strand, within IAI46_01435at 315.889 kb on + strand, within IAI46_01435at 315.911 kb on + strand, within IAI46_01435at 315.912 kb on - strand, within IAI46_01435at 315.984 kb on + strand, within IAI46_01435at 315.984 kb on + strand, within IAI46_01435at 315.984 kb on + strand, within IAI46_01435at 315.986 kb on + strand, within IAI46_01435at 315.986 kb on + strand, within IAI46_01435at 315.986 kb on + strand, within IAI46_01435at 315.986 kb on + strand, within IAI46_01435at 315.987 kb on - strand, within IAI46_01435at 315.987 kb on - strand, within IAI46_01435at 316.002 kb on + strand, within IAI46_01435at 316.042 kb on + strand, within IAI46_01435at 316.042 kb on + strand, within IAI46_01435at 316.043 kb on - strand, within IAI46_01435at 316.115 kb on + strand, within IAI46_01435at 316.116 kb on - strand, within IAI46_01435at 316.193 kb on + strand, within IAI46_01435at 316.194 kb on - strand, within IAI46_01435at 316.290 kb on + strand, within IAI46_01435at 316.290 kb on + strand, within IAI46_01435at 316.291 kb on - strand, within IAI46_01435at 316.291 kb on - strand, within IAI46_01435at 316.333 kb on - strand, within IAI46_01435at 316.393 kb on - strand, within IAI46_01435at 316.446 kb on + strand, within IAI46_01435at 316.446 kb on + strand, within IAI46_01435at 316.632 kb on + strand, within IAI46_01435at 316.632 kb on + strand, within IAI46_01435at 316.633 kb on - strand, within IAI46_01435at 316.633 kb on - strand, within IAI46_01435at 316.633 kb on - strand, within IAI46_01435at 316.743 kb on - strand, within IAI46_01435at 316.743 kb on - strand, within IAI46_01435at 316.807 kb on + strand, within IAI46_01435at 316.842 kb on + strand, within IAI46_01435at 316.843 kb on - strand, within IAI46_01435at 316.927 kb on - strand, within IAI46_01435at 316.927 kb on - strand, within IAI46_01435at 316.927 kb on - strand, within IAI46_01435at 316.959 kb on + strand, within IAI46_01435at 316.960 kb on - strand, within IAI46_01435at 316.988 kb on + strand, within IAI46_01435at 317.018 kb on + strand, within IAI46_01435at 317.058 kb on - strand, within IAI46_01435at 317.078 kb on - strand, within IAI46_01435at 317.078 kb on - strand, within IAI46_01435at 317.083 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.152 kb on - strand, within IAI46_01435at 317.152 kb on - strand, within IAI46_01435at 317.211 kb on + strand, within IAI46_01435at 317.222 kb on + strand, within IAI46_01435at 317.222 kb on + strand, within IAI46_01435at 317.231 kb on + strand, within IAI46_01435at 317.232 kb on - strand, within IAI46_01435at 317.348 kb on + strand, within IAI46_01435at 317.348 kb on + strand, within IAI46_01435at 317.348 kb on + strand, within IAI46_01435at 317.348 kb on + strand, within IAI46_01435at 317.349 kb on - strand, within IAI46_01435at 317.349 kb on - strand, within IAI46_01435at 317.349 kb on - strand, within IAI46_01435at 317.405 kb on + strand, within IAI46_01435at 317.406 kb on - strand, within IAI46_01435at 317.528 kb on + strand, within IAI46_01435at 317.529 kb on - strand, within IAI46_01435at 317.558 kb on + strand, within IAI46_01435at 317.559 kb on - strand, within IAI46_01435at 317.587 kb on + strand, within IAI46_01435at 317.588 kb on - strand, within IAI46_01435at 317.622 kb on + strand, within IAI46_01435at 317.640 kb on + strand, within IAI46_01435at 317.640 kb on + strand, within IAI46_01435at 317.641 kb on - strand, within IAI46_01435at 317.729 kb on + strandat 317.730 kb on - strandat 317.730 kb on - strandat 317.730 kb on - strandat 317.733 kb on + strandat 317.734 kb on - strandat 317.816 kb on - strandat 317.816 kb on - strandat 317.858 kb on - strandat 317.860 kb on + strandat 317.860 kb on + strandat 317.860 kb on + strandat 317.860 kb on + strandat 317.861 kb on - strandat 317.861 kb on - strandat 317.861 kb on - strandat 317.861 kb on - strandat 317.875 kb on + strandat 317.875 kb on + strandat 317.970 kb on - strandat 318.152 kb on + strand, within IAI46_01440at 318.168 kb on - strand, within IAI46_01440at 318.168 kb on - strand, within IAI46_01440at 318.418 kb on + strand, within IAI46_01440at 318.418 kb on + strand, within IAI46_01440at 318.482 kb on + strand, within IAI46_01440at 318.482 kb on + strand, within IAI46_01440at 318.486 kb on + strand, within IAI46_01440at 318.486 kb on + strand, within IAI46_01440at 318.487 kb on - strand, within IAI46_01440at 318.487 kb on - strand, within IAI46_01440at 318.504 kb on + strand, within IAI46_01440at 318.504 kb on + strand, within IAI46_01440at 318.504 kb on + strand, within IAI46_01440at 318.504 kb on + strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.506 kb on + strand, within IAI46_01440at 318.506 kb on + strand, within IAI46_01440at 318.506 kb on + strand, within IAI46_01440at 318.506 kb on + strand, within IAI46_01440at 318.507 kb on - strand, within IAI46_01440at 318.507 kb on - strand, within IAI46_01440at 318.507 kb on - strand, within IAI46_01440at 318.507 kb on - strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.509 kb on - strand, within IAI46_01440at 318.509 kb on - strand, within IAI46_01440at 318.509 kb on - strand, within IAI46_01440at 318.509 kb on - strand, within IAI46_01440at 318.549 kb on + strand, within IAI46_01440at 318.549 kb on + strand, within IAI46_01440at 318.550 kb on - strand, within IAI46_01440at 318.550 kb on - strand, within IAI46_01440at 318.550 kb on - strand, within IAI46_01440at 318.576 kb on + strand, within IAI46_01440at 318.701 kb on + strand, within IAI46_01440at 318.701 kb on + strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.706 kb on - strand, within IAI46_01440at 318.801 kb on + strand, within IAI46_01440at 318.801 kb on + strand, within IAI46_01440at 318.802 kb on - strand, within IAI46_01440at 318.819 kb on + strand, within IAI46_01440at 318.830 kb on + strand, within IAI46_01440at 318.830 kb on + strand, within IAI46_01440at 318.831 kb on - strand, within IAI46_01440at 318.876 kb on + strand, within IAI46_01440at 318.877 kb on - strand, within IAI46_01440at 318.877 kb on - strand, within IAI46_01440at 318.888 kb on + strand, within IAI46_01440at 318.889 kb on - strand, within IAI46_01440at 318.913 kb on + strand, within IAI46_01440at 318.914 kb on - strand, within IAI46_01440at 318.950 kb on + strand, within IAI46_01440at 318.951 kb on - strand, within IAI46_01440

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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314,452 + IAI46_01425 0.77 -0.2
314,453 - IAI46_01425 0.77 +1.3
314,468 + IAI46_01425 0.79 -0.2
314,469 - IAI46_01425 0.79 +0.1
314,469 - IAI46_01425 0.79 +1.3
314,475 - IAI46_01425 0.80 -1.4
314,515 - IAI46_01425 0.85 -0.7
314,515 - IAI46_01425 0.85 +0.1
314,567 + -0.2
314,567 + +0.3
314,610 + +1.6
314,611 - -0.2
314,614 + -1.5
314,682 - -0.6
314,708 + +1.9
314,746 + -0.7
314,746 + +1.1
314,755 + -0.1
314,813 - -0.3
314,831 + -0.4
314,831 + +0.8
314,974 + IAI46_01430 0.32 +0.4
314,974 + IAI46_01430 0.32 +0.9
314,974 + IAI46_01430 0.32 +0.5
314,975 - IAI46_01430 0.32 +0.2
314,975 - IAI46_01430 0.32 -1.2
314,995 + IAI46_01430 0.36 +0.4
314,996 - IAI46_01430 0.36 -0.2
315,084 + IAI46_01430 0.49 -0.2
315,107 + IAI46_01430 0.53 -0.8
315,108 - IAI46_01430 0.53 +0.3
315,108 - IAI46_01430 0.53 +0.6
315,120 - IAI46_01430 0.55 -0.7
315,269 - IAI46_01430 0.78 -0.8
315,324 + IAI46_01430 0.87 +0.8
315,359 + -1.0
315,359 + -0.3
315,360 - +0.6
315,360 - -0.3
315,360 - +0.1
315,371 + -0.1
315,371 + -0.3
315,372 - -0.1
315,396 + -0.6
315,455 + -0.7
315,455 + -0.1
315,520 - +0.2
315,520 - -0.2
315,598 + -0.2
315,656 + -0.1
315,657 - +0.6
315,696 - IAI46_01435 0.11 +0.8
315,710 - IAI46_01435 0.11 -0.2
315,753 + IAI46_01435 0.13 -0.8
315,766 - IAI46_01435 0.14 +0.2
315,802 - IAI46_01435 0.15 +0.1
315,802 - IAI46_01435 0.15 +1.0
315,805 + IAI46_01435 0.15 +0.4
315,816 + IAI46_01435 0.16 +1.4
315,830 + IAI46_01435 0.16 +0.8
315,889 + IAI46_01435 0.18 -0.0
315,889 + IAI46_01435 0.18 +1.3
315,911 + IAI46_01435 0.19 +0.6
315,912 - IAI46_01435 0.19 +0.2
315,984 + IAI46_01435 0.22 +0.4
315,984 + IAI46_01435 0.22 -0.4
315,984 + IAI46_01435 0.22 -1.4
315,986 + IAI46_01435 0.22 +0.6
315,986 + IAI46_01435 0.22 +0.8
315,986 + IAI46_01435 0.22 -0.2
315,986 + IAI46_01435 0.22 +0.7
315,987 - IAI46_01435 0.22 +0.3
315,987 - IAI46_01435 0.22 +0.3
316,002 + IAI46_01435 0.23 -0.5
316,042 + IAI46_01435 0.24 -0.4
316,042 + IAI46_01435 0.24 +0.2
316,043 - IAI46_01435 0.25 -1.3
316,115 + IAI46_01435 0.27 -0.1
316,116 - IAI46_01435 0.27 +0.3
316,193 + IAI46_01435 0.30 +0.1
316,194 - IAI46_01435 0.30 -0.6
316,290 + IAI46_01435 0.34 +0.6
316,290 + IAI46_01435 0.34 -0.1
316,291 - IAI46_01435 0.34 +0.1
316,291 - IAI46_01435 0.34 -0.7
316,333 - IAI46_01435 0.36 +0.3
316,393 - IAI46_01435 0.38 +0.1
316,446 + IAI46_01435 0.40 -1.5
316,446 + IAI46_01435 0.40 +0.6
316,632 + IAI46_01435 0.48 +0.6
316,632 + IAI46_01435 0.48 +0.6
316,633 - IAI46_01435 0.48 -0.2
316,633 - IAI46_01435 0.48 -0.4
316,633 - IAI46_01435 0.48 -0.1
316,743 - IAI46_01435 0.52 +0.1
316,743 - IAI46_01435 0.52 -0.1
316,807 + IAI46_01435 0.55 +0.3
316,842 + IAI46_01435 0.56 -0.0
316,843 - IAI46_01435 0.56 -0.0
316,927 - IAI46_01435 0.59 +0.1
316,927 - IAI46_01435 0.59 +0.0
316,927 - IAI46_01435 0.59 +0.8
316,959 + IAI46_01435 0.61 -1.0
316,960 - IAI46_01435 0.61 +0.5
316,988 + IAI46_01435 0.62 -0.1
317,018 + IAI46_01435 0.63 +0.1
317,058 - IAI46_01435 0.65 +0.7
317,078 - IAI46_01435 0.65 +0.1
317,078 - IAI46_01435 0.65 +0.2
317,083 + IAI46_01435 0.66 +0.1
317,151 + IAI46_01435 0.68 -1.5
317,151 + IAI46_01435 0.68 +0.5
317,151 + IAI46_01435 0.68 +1.2
317,151 + IAI46_01435 0.68 -0.6
317,151 + IAI46_01435 0.68 +0.1
317,152 - IAI46_01435 0.68 +0.9
317,152 - IAI46_01435 0.68 +0.4
317,211 + IAI46_01435 0.71 +0.4
317,222 + IAI46_01435 0.71 -0.1
317,222 + IAI46_01435 0.71 -0.3
317,231 + IAI46_01435 0.71 +0.2
317,232 - IAI46_01435 0.71 -1.3
317,348 + IAI46_01435 0.76 +0.2
317,348 + IAI46_01435 0.76 +0.6
317,348 + IAI46_01435 0.76 -0.1
317,348 + IAI46_01435 0.76 +1.1
317,349 - IAI46_01435 0.76 -0.8
317,349 - IAI46_01435 0.76 -0.7
317,349 - IAI46_01435 0.76 +0.1
317,405 + IAI46_01435 0.78 -0.1
317,406 - IAI46_01435 0.78 +0.3
317,528 + IAI46_01435 0.83 +1.8
317,529 - IAI46_01435 0.83 +0.2
317,558 + IAI46_01435 0.84 +0.3
317,559 - IAI46_01435 0.84 -0.2
317,587 + IAI46_01435 0.85 +0.1
317,588 - IAI46_01435 0.85 -0.1
317,622 + IAI46_01435 0.87 -0.1
317,640 + IAI46_01435 0.88 +0.4
317,640 + IAI46_01435 0.88 -0.5
317,641 - IAI46_01435 0.88 -0.7
317,729 + -0.2
317,730 - +0.2
317,730 - +0.8
317,730 - +0.2
317,733 + -0.1
317,734 - -0.0
317,816 - +0.3
317,816 - +0.1
317,858 - +0.5
317,860 + +0.3
317,860 + -0.1
317,860 + +0.2
317,860 + -0.1
317,861 - +0.1
317,861 - +0.7
317,861 - -0.5
317,861 - -0.1
317,875 + +0.1
317,875 + -1.0
317,970 - +0.2
318,152 + IAI46_01440 0.16 +0.8
318,168 - IAI46_01440 0.17 +0.2
318,168 - IAI46_01440 0.17 -0.2
318,418 + IAI46_01440 0.39 -0.4
318,418 + IAI46_01440 0.39 -0.8
318,482 + IAI46_01440 0.44 -0.3
318,482 + IAI46_01440 0.44 +0.1
318,486 + IAI46_01440 0.45 +1.0
318,486 + IAI46_01440 0.45 +0.8
318,487 - IAI46_01440 0.45 +0.4
318,487 - IAI46_01440 0.45 +0.3
318,504 + IAI46_01440 0.46 -0.9
318,504 + IAI46_01440 0.46 -0.1
318,504 + IAI46_01440 0.46 +0.1
318,504 + IAI46_01440 0.46 -0.0
318,505 - IAI46_01440 0.46 +0.4
318,505 - IAI46_01440 0.46 +0.5
318,505 - IAI46_01440 0.46 -0.4
318,505 - IAI46_01440 0.46 +0.1
318,505 - IAI46_01440 0.46 -1.7
318,506 + IAI46_01440 0.46 +0.6
318,506 + IAI46_01440 0.46 +0.1
318,506 + IAI46_01440 0.46 -0.5
318,506 + IAI46_01440 0.46 +0.8
318,507 - IAI46_01440 0.46 +0.7
318,507 - IAI46_01440 0.46 +1.1
318,507 - IAI46_01440 0.46 -1.7
318,507 - IAI46_01440 0.46 +1.3
318,508 + IAI46_01440 0.46 -1.8
318,508 + IAI46_01440 0.46 +0.7
318,508 + IAI46_01440 0.46 +0.4
318,508 + IAI46_01440 0.46 +1.4
318,508 + IAI46_01440 0.46 +0.6
318,508 + IAI46_01440 0.46 -0.4
318,508 + IAI46_01440 0.46 +0.3
318,508 + IAI46_01440 0.46 +0.7
318,509 - IAI46_01440 0.46 -0.4
318,509 - IAI46_01440 0.46 +0.6
318,509 - IAI46_01440 0.46 +0.0
318,509 - IAI46_01440 0.46 -0.3
318,549 + IAI46_01440 0.50 +1.1
318,549 + IAI46_01440 0.50 -0.7
318,550 - IAI46_01440 0.50 -0.3
318,550 - IAI46_01440 0.50 +0.5
318,550 - IAI46_01440 0.50 +0.0
318,576 + IAI46_01440 0.52 -2.4
318,701 + IAI46_01440 0.63 -1.2
318,701 + IAI46_01440 0.63 -0.9
318,702 - IAI46_01440 0.63 -0.0
318,702 - IAI46_01440 0.63 +0.4
318,702 - IAI46_01440 0.63 +0.7
318,702 - IAI46_01440 0.63 -0.1
318,702 - IAI46_01440 0.63 -0.6
318,706 - IAI46_01440 0.63 -0.6
318,801 + IAI46_01440 0.72 -0.2
318,801 + IAI46_01440 0.72 +0.3
318,802 - IAI46_01440 0.72 -1.5
318,819 + IAI46_01440 0.73 +1.4
318,830 + IAI46_01440 0.74 +0.4
318,830 + IAI46_01440 0.74 -0.1
318,831 - IAI46_01440 0.74 +0.1
318,876 + IAI46_01440 0.78 +1.5
318,877 - IAI46_01440 0.78 +1.0
318,877 - IAI46_01440 0.78 +1.0
318,888 + IAI46_01440 0.79 +0.5
318,889 - IAI46_01440 0.79 +0.2
318,913 + IAI46_01440 0.81 +0.7
318,914 - IAI46_01440 0.81 -0.1
318,950 + IAI46_01440 0.84 +0.0
318,951 - IAI46_01440 0.84 +0.6

Or see this region's nucleotide sequence