Strain Fitness in Serratia liquefaciens MT49 around IAI46_00315

Experiment: Cadmium acetate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00305 and IAI46_00310 overlap by 50 nucleotidesIAI46_00310 and IAI46_00315 are separated by 5 nucleotidesIAI46_00315 and IAI46_00320 are separated by 126 nucleotides IAI46_00305: IAI46_00305 - nucleotidyltransferase domain-containing protein, at 71,958 to 72,578 _00305 IAI46_00310: IAI46_00310 - DNA-binding protein, at 72,529 to 72,969 _00310 IAI46_00315: IAI46_00315 - LysR family transcriptional regulator, at 72,975 to 73,829 _00315 IAI46_00320: IAI46_00320 - cyanate transporter, at 73,956 to 75,155 _00320 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1at 72.023 kb on - strand, within IAI46_00305at 72.023 kb on - strand, within IAI46_00305at 72.087 kb on - strand, within IAI46_00305at 72.134 kb on - strand, within IAI46_00305at 72.160 kb on - strand, within IAI46_00305at 72.251 kb on - strand, within IAI46_00305at 72.312 kb on - strand, within IAI46_00305at 72.335 kb on - strand, within IAI46_00305at 72.335 kb on - strand, within IAI46_00305at 72.335 kb on - strand, within IAI46_00305at 72.335 kb on - strand, within IAI46_00305at 72.388 kb on - strand, within IAI46_00305at 72.433 kb on - strand, within IAI46_00305at 72.480 kb on - strand, within IAI46_00305at 72.489 kb on - strand, within IAI46_00305at 72.489 kb on - strand, within IAI46_00305at 72.492 kb on - strand, within IAI46_00305at 72.492 kb on - strand, within IAI46_00305at 72.498 kb on - strand, within IAI46_00305at 72.498 kb on - strand, within IAI46_00305at 72.509 kb on - strand, within IAI46_00305at 72.509 kb on - strand, within IAI46_00305at 72.537 kb on - strandat 72.548 kb on + strandat 72.548 kb on + strandat 72.548 kb on + strandat 72.549 kb on - strandat 72.569 kb on + strandat 72.569 kb on + strandat 72.569 kb on + strandat 72.569 kb on + strandat 72.570 kb on - strandat 72.570 kb on - strandat 72.570 kb on - strandat 72.570 kb on - strandat 72.648 kb on + strand, within IAI46_00310at 72.649 kb on - strand, within IAI46_00310at 72.649 kb on - strand, within IAI46_00310at 72.676 kb on + strand, within IAI46_00310at 72.676 kb on + strand, within IAI46_00310at 72.676 kb on + strand, within IAI46_00310at 72.676 kb on + strand, within IAI46_00310at 72.677 kb on - strand, within IAI46_00310at 72.678 kb on + strand, within IAI46_00310at 72.679 kb on - strand, within IAI46_00310at 72.741 kb on + strand, within IAI46_00310at 72.741 kb on + strand, within IAI46_00310at 72.741 kb on + strand, within IAI46_00310at 72.742 kb on - strand, within IAI46_00310at 72.742 kb on - strand, within IAI46_00310at 72.742 kb on - strand, within IAI46_00310at 72.761 kb on + strand, within IAI46_00310at 72.762 kb on - strand, within IAI46_00310at 72.853 kb on + strand, within IAI46_00310at 72.853 kb on + strand, within IAI46_00310at 72.854 kb on - strand, within IAI46_00310at 72.854 kb on - strand, within IAI46_00310at 72.854 kb on - strand, within IAI46_00310at 72.857 kb on + strand, within IAI46_00310at 72.857 kb on + strand, within IAI46_00310at 72.857 kb on + strand, within IAI46_00310at 72.857 kb on + strand, within IAI46_00310at 72.858 kb on - strand, within IAI46_00310at 72.866 kb on + strand, within IAI46_00310at 72.866 kb on + strand, within IAI46_00310at 72.867 kb on - strand, within IAI46_00310at 72.886 kb on + strand, within IAI46_00310at 72.886 kb on + strand, within IAI46_00310at 72.886 kb on + strand, within IAI46_00310at 72.886 kb on + strand, within IAI46_00310at 72.887 kb on - strand, within IAI46_00310at 72.887 kb on - strand, within IAI46_00310at 72.887 kb on - strand, within IAI46_00310at 72.887 kb on - strand, within IAI46_00310at 72.927 kb on + strandat 72.967 kb on + strandat 73.045 kb on + strandat 73.046 kb on - strandat 73.048 kb on + strandat 73.048 kb on + strandat 73.048 kb on + strandat 73.049 kb on - strandat 73.199 kb on - strand, within IAI46_00315at 73.322 kb on + strand, within IAI46_00315at 73.370 kb on + strand, within IAI46_00315at 73.415 kb on - strand, within IAI46_00315at 73.415 kb on - strand, within IAI46_00315at 73.418 kb on - strand, within IAI46_00315at 73.503 kb on - strand, within IAI46_00315at 73.560 kb on - strand, within IAI46_00315at 73.612 kb on + strand, within IAI46_00315at 73.612 kb on + strand, within IAI46_00315at 73.612 kb on + strand, within IAI46_00315at 73.612 kb on + strand, within IAI46_00315at 73.613 kb on - strand, within IAI46_00315at 73.613 kb on - strand, within IAI46_00315at 73.613 kb on - strand, within IAI46_00315at 73.732 kb on - strand, within IAI46_00315at 73.763 kb on + strandat 73.763 kb on + strandat 73.764 kb on - strandat 73.764 kb on - strandat 73.798 kb on - strandat 73.884 kb on + strandat 73.884 kb on + strandat 73.885 kb on - strandat 73.885 kb on - strandat 73.890 kb on - strandat 73.890 kb on - strandat 73.907 kb on + strandat 73.908 kb on - strandat 73.950 kb on + strandat 73.950 kb on + strandat 73.951 kb on - strandat 73.951 kb on - strandat 73.961 kb on - strandat 73.961 kb on - strandat 73.961 kb on - strandat 73.970 kb on + strandat 73.970 kb on + strandat 73.970 kb on + strandat 73.971 kb on - strandat 73.971 kb on - strandat 73.971 kb on - strandat 73.987 kb on + strandat 73.988 kb on - strandat 74.060 kb on + strandat 74.342 kb on + strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.433 kb on - strand, within IAI46_00320at 74.433 kb on - strand, within IAI46_00320at 74.467 kb on - strand, within IAI46_00320at 74.468 kb on + strand, within IAI46_00320at 74.468 kb on + strand, within IAI46_00320at 74.581 kb on + strand, within IAI46_00320at 74.616 kb on + strand, within IAI46_00320at 74.630 kb on + strand, within IAI46_00320at 74.670 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.795 kb on - strand, within IAI46_00320

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic
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72,023 - IAI46_00305 0.10 -0.7
72,023 - IAI46_00305 0.10 -0.6
72,087 - IAI46_00305 0.21 -0.5
72,134 - IAI46_00305 0.28 +0.3
72,160 - IAI46_00305 0.33 +0.2
72,251 - IAI46_00305 0.47 +0.6
72,312 - IAI46_00305 0.57 -1.6
72,335 - IAI46_00305 0.61 +0.0
72,335 - IAI46_00305 0.61 +0.1
72,335 - IAI46_00305 0.61 -0.5
72,335 - IAI46_00305 0.61 -0.1
72,388 - IAI46_00305 0.69 +0.1
72,433 - IAI46_00305 0.76 -1.1
72,480 - IAI46_00305 0.84 -0.8
72,489 - IAI46_00305 0.86 +1.6
72,489 - IAI46_00305 0.86 -0.5
72,492 - IAI46_00305 0.86 +1.3
72,492 - IAI46_00305 0.86 -0.7
72,498 - IAI46_00305 0.87 -0.1
72,498 - IAI46_00305 0.87 -0.9
72,509 - IAI46_00305 0.89 -0.1
72,509 - IAI46_00305 0.89 +0.8
72,537 - -0.5
72,548 + -0.2
72,548 + -1.5
72,548 + +1.0
72,549 - -0.1
72,569 + +0.2
72,569 + +0.9
72,569 + +1.6
72,569 + +0.4
72,570 - -0.4
72,570 - +0.9
72,570 - -0.6
72,570 - +0.9
72,648 + IAI46_00310 0.27 -0.4
72,649 - IAI46_00310 0.27 +0.3
72,649 - IAI46_00310 0.27 -0.0
72,676 + IAI46_00310 0.33 -1.3
72,676 + IAI46_00310 0.33 -1.1
72,676 + IAI46_00310 0.33 +0.1
72,676 + IAI46_00310 0.33 -0.1
72,677 - IAI46_00310 0.34 -0.3
72,678 + IAI46_00310 0.34 +0.0
72,679 - IAI46_00310 0.34 +0.1
72,741 + IAI46_00310 0.48 +0.3
72,741 + IAI46_00310 0.48 +0.4
72,741 + IAI46_00310 0.48 -1.0
72,742 - IAI46_00310 0.48 +0.7
72,742 - IAI46_00310 0.48 -1.6
72,742 - IAI46_00310 0.48 +0.6
72,761 + IAI46_00310 0.53 +0.3
72,762 - IAI46_00310 0.53 +0.3
72,853 + IAI46_00310 0.73 -1.1
72,853 + IAI46_00310 0.73 -1.5
72,854 - IAI46_00310 0.74 +0.6
72,854 - IAI46_00310 0.74 -0.2
72,854 - IAI46_00310 0.74 +1.2
72,857 + IAI46_00310 0.74 +1.1
72,857 + IAI46_00310 0.74 -0.6
72,857 + IAI46_00310 0.74 +0.3
72,857 + IAI46_00310 0.74 +0.8
72,858 - IAI46_00310 0.75 +0.4
72,866 + IAI46_00310 0.76 -0.3
72,866 + IAI46_00310 0.76 +0.4
72,867 - IAI46_00310 0.77 +0.6
72,886 + IAI46_00310 0.81 +0.1
72,886 + IAI46_00310 0.81 -1.4
72,886 + IAI46_00310 0.81 +0.4
72,886 + IAI46_00310 0.81 +0.0
72,887 - IAI46_00310 0.81 -2.5
72,887 - IAI46_00310 0.81 -1.0
72,887 - IAI46_00310 0.81 -1.2
72,887 - IAI46_00310 0.81 -0.4
72,927 + -0.6
72,967 + -0.3
73,045 + +0.2
73,046 - +1.6
73,048 + -0.6
73,048 + +0.6
73,048 + +0.5
73,049 - +1.6
73,199 - IAI46_00315 0.26 +0.2
73,322 + IAI46_00315 0.41 -0.0
73,370 + IAI46_00315 0.46 +0.0
73,415 - IAI46_00315 0.51 -1.0
73,415 - IAI46_00315 0.51 +0.3
73,418 - IAI46_00315 0.52 +0.5
73,503 - IAI46_00315 0.62 +0.4
73,560 - IAI46_00315 0.68 -0.7
73,612 + IAI46_00315 0.75 -0.0
73,612 + IAI46_00315 0.75 +1.5
73,612 + IAI46_00315 0.75 -0.5
73,612 + IAI46_00315 0.75 -1.2
73,613 - IAI46_00315 0.75 +0.3
73,613 - IAI46_00315 0.75 -0.3
73,613 - IAI46_00315 0.75 -0.9
73,732 - IAI46_00315 0.89 -0.3
73,763 + -0.4
73,763 + +0.9
73,764 - -0.1
73,764 - -1.2
73,798 - +1.7
73,884 + -0.8
73,884 + -1.1
73,885 - +0.5
73,885 - -0.5
73,890 - -1.4
73,890 - -0.1
73,907 + +0.4
73,908 - +0.3
73,950 + -0.1
73,950 + -0.2
73,951 - -0.8
73,951 - -0.7
73,961 - +0.4
73,961 - -1.3
73,961 - -0.0
73,970 + -0.1
73,970 + +1.2
73,970 + -0.5
73,971 - +0.2
73,971 - +0.4
73,971 - +0.6
73,987 + +0.9
73,988 - -0.3
74,060 + -0.2
74,342 + IAI46_00320 0.32 +1.0
74,343 - IAI46_00320 0.32 +0.5
74,343 - IAI46_00320 0.32 +0.2
74,343 - IAI46_00320 0.32 +0.9
74,343 - IAI46_00320 0.32 +0.4
74,343 - IAI46_00320 0.32 -0.1
74,343 - IAI46_00320 0.32 +0.8
74,433 - IAI46_00320 0.40 +0.6
74,433 - IAI46_00320 0.40 -2.1
74,467 - IAI46_00320 0.43 +0.9
74,468 + IAI46_00320 0.43 +0.1
74,468 + IAI46_00320 0.43 -0.3
74,581 + IAI46_00320 0.52 +1.1
74,616 + IAI46_00320 0.55 -0.0
74,630 + IAI46_00320 0.56 +0.2
74,670 + IAI46_00320 0.59 +1.0
74,673 + IAI46_00320 0.60 +0.5
74,673 + IAI46_00320 0.60 -1.4
74,673 + IAI46_00320 0.60 -0.1
74,673 + IAI46_00320 0.60 -0.9
74,674 - IAI46_00320 0.60 -0.2
74,674 - IAI46_00320 0.60 -0.7
74,674 - IAI46_00320 0.60 -0.0
74,795 - IAI46_00320 0.70 +0.3

Or see this region's nucleotide sequence