Experiment: Cadmium acetate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00205 and IAI46_00210 are separated by 145 nucleotides IAI46_00210 and IAI46_00215 are separated by 12 nucleotides IAI46_00215 and IAI46_00220 overlap by 4 nucleotides
IAI46_00205: IAI46_00205 - formate dehydrogenase accessory sulfurtransferase FdhD, at 46,113 to 46,958
_00205
IAI46_00210: IAI46_00210 - formate dehydrogenase-N subunit alpha, at 47,104 to 50,151
_00210
IAI46_00215: IAI46_00215 - formate dehydrogenase subunit beta, at 50,164 to 51,063
_00215
IAI46_00220: IAI46_00220 - formate dehydrogenase cytochrome b556 subunit, at 51,060 to 51,695
_00220
Position (kb) 47
48
49
50
51 Strain fitness (log2 ratio) -2
-1
0
1
2 at 46.114 kb on + strand at 46.127 kb on + strand at 46.127 kb on + strand at 46.127 kb on + strand at 46.128 kb on - strand at 46.157 kb on + strand at 46.158 kb on - strand at 46.300 kb on + strand, within IAI46_00205 at 46.320 kb on + strand, within IAI46_00205 at 46.321 kb on - strand, within IAI46_00205 at 46.324 kb on - strand, within IAI46_00205 at 46.356 kb on + strand, within IAI46_00205 at 46.413 kb on + strand, within IAI46_00205 at 46.413 kb on + strand, within IAI46_00205 at 46.414 kb on - strand, within IAI46_00205 at 46.414 kb on - strand, within IAI46_00205 at 46.414 kb on - strand, within IAI46_00205 at 46.431 kb on + strand, within IAI46_00205 at 46.431 kb on + strand, within IAI46_00205 at 46.432 kb on - strand, within IAI46_00205 at 46.480 kb on - strand, within IAI46_00205 at 46.514 kb on + strand, within IAI46_00205 at 46.584 kb on - strand, within IAI46_00205 at 46.590 kb on + strand, within IAI46_00205 at 46.591 kb on - strand, within IAI46_00205 at 46.665 kb on + strand, within IAI46_00205 at 46.665 kb on + strand, within IAI46_00205 at 46.666 kb on - strand, within IAI46_00205 at 46.666 kb on - strand, within IAI46_00205 at 46.685 kb on + strand, within IAI46_00205 at 46.697 kb on + strand, within IAI46_00205 at 46.705 kb on - strand, within IAI46_00205 at 46.705 kb on - strand, within IAI46_00205 at 46.705 kb on - strand, within IAI46_00205 at 46.706 kb on + strand, within IAI46_00205 at 46.706 kb on + strand, within IAI46_00205 at 46.711 kb on + strand, within IAI46_00205 at 46.711 kb on + strand, within IAI46_00205 at 46.711 kb on + strand, within IAI46_00205 at 46.711 kb on + strand, within IAI46_00205 at 46.711 kb on + strand, within IAI46_00205 at 46.712 kb on - strand, within IAI46_00205 at 46.712 kb on - strand, within IAI46_00205 at 46.712 kb on - strand, within IAI46_00205 at 46.712 kb on - strand, within IAI46_00205 at 46.712 kb on - strand, within IAI46_00205 at 46.712 kb on - strand, within IAI46_00205 at 46.817 kb on + strand, within IAI46_00205 at 46.819 kb on + strand, within IAI46_00205 at 46.819 kb on + strand, within IAI46_00205 at 46.819 kb on + strand, within IAI46_00205 at 46.888 kb on + strand at 46.889 kb on - strand at 46.929 kb on + strand at 46.930 kb on - strand at 46.930 kb on - strand at 46.930 kb on - strand at 46.930 kb on - strand at 46.930 kb on - strand at 46.930 kb on - strand at 46.947 kb on + strand at 46.948 kb on - strand at 46.949 kb on + strand at 46.949 kb on + strand at 46.949 kb on + strand at 46.949 kb on + strand at 46.950 kb on - strand at 46.950 kb on - strand at 46.950 kb on - strand at 46.950 kb on - strand at 46.960 kb on + strand at 46.960 kb on + strand at 46.988 kb on + strand at 46.988 kb on + strand at 46.988 kb on + strand at 46.989 kb on - strand at 46.989 kb on - strand at 46.989 kb on - strand at 47.003 kb on + strand at 47.004 kb on - strand at 47.131 kb on - strand at 47.215 kb on + strand at 47.244 kb on + strand at 47.245 kb on - strand at 47.247 kb on + strand at 47.248 kb on - strand at 47.248 kb on - strand at 47.253 kb on + strand at 47.253 kb on + strand at 47.253 kb on + strand at 47.253 kb on + strand at 47.253 kb on + strand at 47.254 kb on - strand at 47.254 kb on - strand at 47.254 kb on - strand at 47.254 kb on - strand at 47.254 kb on - strand at 47.257 kb on + strand at 47.257 kb on + strand at 47.257 kb on + strand at 47.258 kb on - strand at 47.258 kb on - strand at 47.258 kb on - strand at 47.258 kb on - strand at 47.258 kb on - strand at 47.258 kb on - strand at 47.287 kb on + strand at 47.287 kb on + strand at 47.288 kb on - strand at 47.288 kb on - strand at 47.431 kb on + strand, within IAI46_00210 at 47.669 kb on + strand, within IAI46_00210 at 47.874 kb on + strand, within IAI46_00210 at 47.918 kb on - strand, within IAI46_00210 at 47.918 kb on - strand, within IAI46_00210 at 47.920 kb on - strand, within IAI46_00210 at 48.005 kb on - strand, within IAI46_00210 at 48.017 kb on - strand, within IAI46_00210 at 48.017 kb on - strand, within IAI46_00210 at 48.079 kb on + strand, within IAI46_00210 at 48.080 kb on - strand, within IAI46_00210 at 48.100 kb on + strand, within IAI46_00210 at 48.100 kb on + strand, within IAI46_00210 at 48.101 kb on - strand, within IAI46_00210 at 48.121 kb on + strand, within IAI46_00210 at 48.121 kb on + strand, within IAI46_00210 at 48.121 kb on + strand, within IAI46_00210 at 48.122 kb on - strand, within IAI46_00210 at 48.215 kb on - strand, within IAI46_00210 at 48.216 kb on + strand, within IAI46_00210 at 48.216 kb on + strand, within IAI46_00210 at 48.216 kb on + strand, within IAI46_00210 at 48.280 kb on + strand, within IAI46_00210 at 48.280 kb on + strand, within IAI46_00210 at 48.280 kb on + strand, within IAI46_00210 at 48.280 kb on + strand, within IAI46_00210 at 48.325 kb on + strand, within IAI46_00210 at 48.325 kb on + strand, within IAI46_00210 at 48.326 kb on - strand, within IAI46_00210 at 48.373 kb on - strand, within IAI46_00210 at 48.454 kb on - strand, within IAI46_00210 at 48.502 kb on + strand, within IAI46_00210 at 48.502 kb on + strand, within IAI46_00210 at 48.544 kb on + strand, within IAI46_00210 at 48.544 kb on + strand, within IAI46_00210 at 48.544 kb on + strand, within IAI46_00210 at 48.592 kb on + strand, within IAI46_00210 at 48.604 kb on + strand, within IAI46_00210 at 48.640 kb on + strand, within IAI46_00210 at 48.641 kb on - strand, within IAI46_00210 at 48.641 kb on - strand, within IAI46_00210 at 48.706 kb on + strand, within IAI46_00210 at 48.721 kb on + strand, within IAI46_00210 at 48.721 kb on + strand, within IAI46_00210 at 48.722 kb on - strand, within IAI46_00210 at 48.758 kb on - strand, within IAI46_00210 at 48.848 kb on + strand, within IAI46_00210 at 48.848 kb on + strand, within IAI46_00210 at 48.848 kb on + strand, within IAI46_00210 at 48.848 kb on + strand, within IAI46_00210 at 48.848 kb on + strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.849 kb on - strand, within IAI46_00210 at 48.858 kb on + strand, within IAI46_00210 at 48.858 kb on + strand, within IAI46_00210 at 48.859 kb on - strand, within IAI46_00210 at 48.859 kb on - strand, within IAI46_00210 at 49.093 kb on + strand, within IAI46_00210 at 49.093 kb on + strand, within IAI46_00210 at 49.093 kb on + strand, within IAI46_00210 at 49.094 kb on - strand, within IAI46_00210 at 49.094 kb on - strand, within IAI46_00210 at 49.094 kb on - strand, within IAI46_00210 at 49.147 kb on + strand, within IAI46_00210 at 49.327 kb on - strand, within IAI46_00210 at 49.392 kb on + strand, within IAI46_00210 at 49.392 kb on + strand, within IAI46_00210 at 49.438 kb on + strand, within IAI46_00210 at 49.439 kb on - strand, within IAI46_00210 at 49.620 kb on + strand, within IAI46_00210 at 49.651 kb on + strand, within IAI46_00210 at 49.651 kb on + strand, within IAI46_00210 at 49.786 kb on + strand, within IAI46_00210 at 49.787 kb on - strand, within IAI46_00210 at 49.787 kb on - strand, within IAI46_00210 at 49.787 kb on - strand, within IAI46_00210 at 49.787 kb on - strand, within IAI46_00210 at 49.811 kb on - strand, within IAI46_00210 at 49.940 kb on - strand at 49.940 kb on - strand at 49.940 kb on - strand at 49.940 kb on - strand at 49.940 kb on - strand at 50.010 kb on + strand at 50.035 kb on + strand at 50.163 kb on + strand at 50.163 kb on + strand at 50.164 kb on - strand at 50.164 kb on - strand at 50.193 kb on + strand at 50.359 kb on + strand, within IAI46_00215 at 50.359 kb on + strand, within IAI46_00215 at 50.525 kb on - strand, within IAI46_00215 at 50.563 kb on - strand, within IAI46_00215 at 50.575 kb on + strand, within IAI46_00215 at 50.635 kb on + strand, within IAI46_00215 at 50.635 kb on + strand, within IAI46_00215 at 50.643 kb on + strand, within IAI46_00215 at 50.643 kb on + strand, within IAI46_00215 at 50.643 kb on + strand, within IAI46_00215 at 50.644 kb on - strand, within IAI46_00215 at 50.644 kb on - strand, within IAI46_00215 at 50.786 kb on - strand, within IAI46_00215 at 50.804 kb on - strand, within IAI46_00215 at 50.835 kb on + strand, within IAI46_00215 at 50.835 kb on + strand, within IAI46_00215 at 50.835 kb on + strand, within IAI46_00215 at 50.835 kb on + strand, within IAI46_00215 at 50.835 kb on + strand, within IAI46_00215 at 50.835 kb on + strand, within IAI46_00215 at 50.836 kb on - strand, within IAI46_00215 at 50.836 kb on - strand, within IAI46_00215 at 50.836 kb on - strand, within IAI46_00215 at 50.839 kb on + strand, within IAI46_00215 at 50.839 kb on + strand, within IAI46_00215 at 50.839 kb on + strand, within IAI46_00215 at 50.839 kb on + strand, within IAI46_00215 at 50.839 kb on + strand, within IAI46_00215 at 50.839 kb on + strand, within IAI46_00215 at 50.839 kb on + strand, within IAI46_00215 at 50.840 kb on - strand, within IAI46_00215 at 50.840 kb on - strand, within IAI46_00215 at 50.840 kb on - strand, within IAI46_00215 at 50.840 kb on - strand, within IAI46_00215 at 50.840 kb on - strand, within IAI46_00215 at 50.872 kb on + strand, within IAI46_00215 at 50.872 kb on + strand, within IAI46_00215 at 50.873 kb on - strand, within IAI46_00215 at 50.982 kb on - strand at 50.982 kb on - strand at 50.989 kb on + strand at 50.989 kb on + strand at 51.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 20 uM, anaerobic remove 46,114 + +0.2 46,127 + +0.4 46,127 + +0.7 46,127 + -0.0 46,128 - +0.1 46,157 + -0.7 46,158 - -1.4 46,300 + IAI46_00205 0.22 -1.3 46,320 + IAI46_00205 0.24 +0.3 46,321 - IAI46_00205 0.25 -0.4 46,324 - IAI46_00205 0.25 -0.2 46,356 + IAI46_00205 0.29 -1.1 46,413 + IAI46_00205 0.35 +0.8 46,413 + IAI46_00205 0.35 +0.7 46,414 - IAI46_00205 0.36 -0.6 46,414 - IAI46_00205 0.36 +0.5 46,414 - IAI46_00205 0.36 -0.5 46,431 + IAI46_00205 0.38 +0.7 46,431 + IAI46_00205 0.38 -1.5 46,432 - IAI46_00205 0.38 +0.8 46,480 - IAI46_00205 0.43 -0.2 46,514 + IAI46_00205 0.47 -0.1 46,584 - IAI46_00205 0.56 -0.3 46,590 + IAI46_00205 0.56 +0.0 46,591 - IAI46_00205 0.57 +0.4 46,665 + IAI46_00205 0.65 +0.5 46,665 + IAI46_00205 0.65 -0.4 46,666 - IAI46_00205 0.65 +0.4 46,666 - IAI46_00205 0.65 -0.1 46,685 + IAI46_00205 0.68 -0.5 46,697 + IAI46_00205 0.69 -0.1 46,705 - IAI46_00205 0.70 -1.9 46,705 - IAI46_00205 0.70 +0.0 46,705 - IAI46_00205 0.70 -0.6 46,706 + IAI46_00205 0.70 +0.7 46,706 + IAI46_00205 0.70 -0.6 46,711 + IAI46_00205 0.71 -0.8 46,711 + IAI46_00205 0.71 -1.1 46,711 + IAI46_00205 0.71 -1.9 46,711 + IAI46_00205 0.71 -0.6 46,711 + IAI46_00205 0.71 +0.3 46,712 - IAI46_00205 0.71 +0.3 46,712 - IAI46_00205 0.71 -0.3 46,712 - IAI46_00205 0.71 +1.4 46,712 - IAI46_00205 0.71 +0.0 46,712 - IAI46_00205 0.71 -0.2 46,712 - IAI46_00205 0.71 -1.6 46,817 + IAI46_00205 0.83 +0.9 46,819 + IAI46_00205 0.83 -0.3 46,819 + IAI46_00205 0.83 +0.2 46,819 + IAI46_00205 0.83 -0.7 46,888 + -0.3 46,889 - +0.5 46,929 + -0.5 46,930 - -0.2 46,930 - +0.0 46,930 - +1.0 46,930 - -0.4 46,930 - -0.1 46,930 - +0.4 46,947 + +0.4 46,948 - +0.8 46,949 + +0.4 46,949 + +0.2 46,949 + -1.8 46,949 + +0.0 46,950 - +0.2 46,950 - -0.0 46,950 - +0.5 46,950 - -0.3 46,960 + +0.1 46,960 + +0.6 46,988 + +0.9 46,988 + +0.4 46,988 + -0.0 46,989 - -0.0 46,989 - +0.3 46,989 - -0.4 47,003 + -0.9 47,004 - +1.0 47,131 - +0.2 47,215 + -0.7 47,244 + -0.3 47,245 - +0.3 47,247 + -0.1 47,248 - +1.3 47,248 - +0.2 47,253 + +1.7 47,253 + +0.6 47,253 + -0.6 47,253 + -0.6 47,253 + +0.0 47,254 - +0.0 47,254 - -0.5 47,254 - +0.6 47,254 - -2.7 47,254 - +0.2 47,257 + +0.3 47,257 + +0.2 47,257 + -0.1 47,258 - -0.3 47,258 - -1.4 47,258 - -0.0 47,258 - +0.3 47,258 - -0.2 47,258 - +0.1 47,287 + +0.4 47,287 + +0.6 47,288 - +0.3 47,288 - +0.1 47,431 + IAI46_00210 0.11 +0.6 47,669 + IAI46_00210 0.19 -0.1 47,874 + IAI46_00210 0.25 -0.3 47,918 - IAI46_00210 0.27 -0.5 47,918 - IAI46_00210 0.27 -0.8 47,920 - IAI46_00210 0.27 +0.3 48,005 - IAI46_00210 0.30 -0.8 48,017 - IAI46_00210 0.30 +0.2 48,017 - IAI46_00210 0.30 +0.1 48,079 + IAI46_00210 0.32 -1.0 48,080 - IAI46_00210 0.32 -0.5 48,100 + IAI46_00210 0.33 -0.0 48,100 + IAI46_00210 0.33 +0.3 48,101 - IAI46_00210 0.33 -0.3 48,121 + IAI46_00210 0.33 -1.7 48,121 + IAI46_00210 0.33 +0.4 48,121 + IAI46_00210 0.33 -0.4 48,122 - IAI46_00210 0.33 -1.1 48,215 - IAI46_00210 0.36 +1.4 48,216 + IAI46_00210 0.36 +0.0 48,216 + IAI46_00210 0.36 -1.0 48,216 + IAI46_00210 0.36 +0.7 48,280 + IAI46_00210 0.39 -0.4 48,280 + IAI46_00210 0.39 +0.9 48,280 + IAI46_00210 0.39 -0.1 48,280 + IAI46_00210 0.39 +0.1 48,325 + IAI46_00210 0.40 -0.0 48,325 + IAI46_00210 0.40 -0.4 48,326 - IAI46_00210 0.40 +0.4 48,373 - IAI46_00210 0.42 -0.6 48,454 - IAI46_00210 0.44 +1.9 48,502 + IAI46_00210 0.46 -0.7 48,502 + IAI46_00210 0.46 +0.4 48,544 + IAI46_00210 0.47 +0.3 48,544 + IAI46_00210 0.47 +0.4 48,544 + IAI46_00210 0.47 -0.3 48,592 + IAI46_00210 0.49 -0.2 48,604 + IAI46_00210 0.49 -0.3 48,640 + IAI46_00210 0.50 -0.5 48,641 - IAI46_00210 0.50 +0.2 48,641 - IAI46_00210 0.50 -0.6 48,706 + IAI46_00210 0.53 -0.1 48,721 + IAI46_00210 0.53 +0.2 48,721 + IAI46_00210 0.53 -0.9 48,722 - IAI46_00210 0.53 +0.1 48,758 - IAI46_00210 0.54 -0.6 48,848 + IAI46_00210 0.57 -0.2 48,848 + IAI46_00210 0.57 +0.2 48,848 + IAI46_00210 0.57 -0.1 48,848 + IAI46_00210 0.57 +1.3 48,848 + IAI46_00210 0.57 +1.2 48,849 - IAI46_00210 0.57 -0.1 48,849 - IAI46_00210 0.57 +0.2 48,849 - IAI46_00210 0.57 +0.1 48,849 - IAI46_00210 0.57 -0.2 48,849 - IAI46_00210 0.57 +0.8 48,849 - IAI46_00210 0.57 +0.4 48,849 - IAI46_00210 0.57 +1.1 48,849 - IAI46_00210 0.57 -0.5 48,849 - IAI46_00210 0.57 +0.9 48,858 + IAI46_00210 0.58 +0.1 48,858 + IAI46_00210 0.58 +0.2 48,859 - IAI46_00210 0.58 +0.0 48,859 - IAI46_00210 0.58 -0.3 49,093 + IAI46_00210 0.65 +0.1 49,093 + IAI46_00210 0.65 +0.2 49,093 + IAI46_00210 0.65 +0.8 49,094 - IAI46_00210 0.65 -0.3 49,094 - IAI46_00210 0.65 +1.0 49,094 - IAI46_00210 0.65 -0.8 49,147 + IAI46_00210 0.67 -0.5 49,327 - IAI46_00210 0.73 +0.4 49,392 + IAI46_00210 0.75 +2.1 49,392 + IAI46_00210 0.75 +0.6 49,438 + IAI46_00210 0.77 -0.2 49,439 - IAI46_00210 0.77 -0.3 49,620 + IAI46_00210 0.83 -0.3 49,651 + IAI46_00210 0.84 -1.5 49,651 + IAI46_00210 0.84 +0.1 49,786 + IAI46_00210 0.88 +0.3 49,787 - IAI46_00210 0.88 +0.9 49,787 - IAI46_00210 0.88 +0.1 49,787 - IAI46_00210 0.88 -0.0 49,787 - IAI46_00210 0.88 +0.0 49,811 - IAI46_00210 0.89 +0.1 49,940 - -0.8 49,940 - -1.1 49,940 - -0.3 49,940 - +0.3 49,940 - +1.3 50,010 + -0.0 50,035 + +0.3 50,163 + -1.0 50,163 + +1.4 50,164 - -1.4 50,164 - -0.3 50,193 + +0.4 50,359 + IAI46_00215 0.22 -0.5 50,359 + IAI46_00215 0.22 +0.5 50,525 - IAI46_00215 0.40 -0.3 50,563 - IAI46_00215 0.44 -0.9 50,575 + IAI46_00215 0.46 +0.0 50,635 + IAI46_00215 0.52 -0.6 50,635 + IAI46_00215 0.52 -0.8 50,643 + IAI46_00215 0.53 +0.5 50,643 + IAI46_00215 0.53 -0.1 50,643 + IAI46_00215 0.53 +0.7 50,644 - IAI46_00215 0.53 +0.6 50,644 - IAI46_00215 0.53 -0.1 50,786 - IAI46_00215 0.69 +0.4 50,804 - IAI46_00215 0.71 +0.2 50,835 + IAI46_00215 0.75 +0.7 50,835 + IAI46_00215 0.75 -0.5 50,835 + IAI46_00215 0.75 -0.1 50,835 + IAI46_00215 0.75 +0.2 50,835 + IAI46_00215 0.75 +0.4 50,835 + IAI46_00215 0.75 +0.6 50,836 - IAI46_00215 0.75 -0.3 50,836 - IAI46_00215 0.75 +0.9 50,836 - IAI46_00215 0.75 -0.4 50,839 + IAI46_00215 0.75 +0.3 50,839 + IAI46_00215 0.75 +0.5 50,839 + IAI46_00215 0.75 -0.0 50,839 + IAI46_00215 0.75 -0.1 50,839 + IAI46_00215 0.75 -1.3 50,839 + IAI46_00215 0.75 -0.6 50,839 + IAI46_00215 0.75 +0.4 50,840 - IAI46_00215 0.75 -0.8 50,840 - IAI46_00215 0.75 +0.6 50,840 - IAI46_00215 0.75 +0.6 50,840 - IAI46_00215 0.75 +0.4 50,840 - IAI46_00215 0.75 -1.6 50,872 + IAI46_00215 0.79 -0.3 50,872 + IAI46_00215 0.79 +0.3 50,873 - IAI46_00215 0.79 +0.0 50,982 - -0.1 50,982 - -1.3 50,989 + -0.8 50,989 + -0.0 51,077 + -0.2
Or see this region's nucleotide sequence