Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4231

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4229 and EX28DRAFT_4230 are separated by 121 nucleotidesEX28DRAFT_4230 and EX28DRAFT_4231 are separated by 80 nucleotidesEX28DRAFT_4231 and EX28DRAFT_4232 are separated by 423 nucleotides EX28DRAFT_4229: EX28DRAFT_4229 - Hok/gef family, at 34,938 to 35,090 _4229 EX28DRAFT_4230: EX28DRAFT_4230 - Sel1 repeat, at 35,212 to 35,886 _4230 EX28DRAFT_4231: EX28DRAFT_4231 - Na+/H+-dicarboxylate symporters, at 35,967 to 37,280 _4231 EX28DRAFT_4232: EX28DRAFT_4232 - acetate--CoA ligase, at 37,704 to 39,662 _4232 Position (kb) 35 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 34.974 kb on - strand, within EX28DRAFT_4229at 35.142 kb on + strandat 35.176 kb on + strandat 35.177 kb on - strandat 35.203 kb on + strandat 35.204 kb on - strandat 35.221 kb on - strandat 35.244 kb on + strandat 35.323 kb on + strand, within EX28DRAFT_4230at 35.334 kb on + strand, within EX28DRAFT_4230at 35.335 kb on - strand, within EX28DRAFT_4230at 35.338 kb on + strand, within EX28DRAFT_4230at 35.339 kb on - strand, within EX28DRAFT_4230at 35.339 kb on - strand, within EX28DRAFT_4230at 35.339 kb on - strand, within EX28DRAFT_4230at 35.339 kb on - strand, within EX28DRAFT_4230at 35.339 kb on - strand, within EX28DRAFT_4230at 35.339 kb on - strand, within EX28DRAFT_4230at 35.339 kb on - strand, within EX28DRAFT_4230at 35.339 kb on - strand, within EX28DRAFT_4230at 35.463 kb on + strand, within EX28DRAFT_4230at 35.622 kb on - strand, within EX28DRAFT_4230at 35.784 kb on + strand, within EX28DRAFT_4230at 35.960 kb on + strandat 36.222 kb on - strand, within EX28DRAFT_4231at 36.302 kb on + strand, within EX28DRAFT_4231at 36.308 kb on + strand, within EX28DRAFT_4231at 36.380 kb on + strand, within EX28DRAFT_4231at 36.383 kb on + strand, within EX28DRAFT_4231at 36.665 kb on - strand, within EX28DRAFT_4231at 36.684 kb on + strand, within EX28DRAFT_4231at 36.684 kb on + strand, within EX28DRAFT_4231at 36.854 kb on + strand, within EX28DRAFT_4231at 36.855 kb on - strand, within EX28DRAFT_4231at 36.855 kb on - strand, within EX28DRAFT_4231at 36.899 kb on + strand, within EX28DRAFT_4231at 36.900 kb on - strand, within EX28DRAFT_4231at 36.900 kb on - strand, within EX28DRAFT_4231at 36.941 kb on + strand, within EX28DRAFT_4231at 36.941 kb on + strand, within EX28DRAFT_4231at 36.942 kb on - strand, within EX28DRAFT_4231at 36.942 kb on - strand, within EX28DRAFT_4231at 37.021 kb on + strand, within EX28DRAFT_4231at 37.021 kb on + strand, within EX28DRAFT_4231at 37.021 kb on + strand, within EX28DRAFT_4231at 37.025 kb on + strand, within EX28DRAFT_4231at 37.026 kb on - strand, within EX28DRAFT_4231at 37.043 kb on + strand, within EX28DRAFT_4231at 37.143 kb on - strand, within EX28DRAFT_4231at 37.340 kb on + strandat 37.340 kb on + strandat 37.341 kb on - strandat 37.401 kb on + strandat 37.402 kb on - strandat 37.402 kb on - strandat 37.486 kb on + strandat 37.555 kb on + strandat 37.591 kb on - strandat 37.641 kb on - strandat 37.672 kb on - strandat 37.685 kb on + strandat 37.715 kb on - strandat 37.715 kb on - strandat 37.773 kb on + strandat 37.797 kb on - strandat 37.904 kb on + strand, within EX28DRAFT_4232at 37.905 kb on - strand, within EX28DRAFT_4232at 38.024 kb on + strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.027 kb on + strand, within EX28DRAFT_4232at 38.027 kb on + strand, within EX28DRAFT_4232at 38.027 kb on + strand, within EX28DRAFT_4232at 38.027 kb on + strand, within EX28DRAFT_4232at 38.028 kb on - strand, within EX28DRAFT_4232at 38.028 kb on - strand, within EX28DRAFT_4232at 38.031 kb on + strand, within EX28DRAFT_4232at 38.031 kb on + strand, within EX28DRAFT_4232at 38.031 kb on + strand, within EX28DRAFT_4232at 38.111 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.118 kb on - strand, within EX28DRAFT_4232

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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34,974 - EX28DRAFT_4229 0.24 +0.2
35,142 + +0.0
35,176 + +0.2
35,177 - +0.5
35,203 + -1.2
35,204 - -0.3
35,221 - -0.1
35,244 + +0.3
35,323 + EX28DRAFT_4230 0.16 +3.8
35,334 + EX28DRAFT_4230 0.18 -0.5
35,335 - EX28DRAFT_4230 0.18 +0.2
35,338 + EX28DRAFT_4230 0.19 -0.5
35,339 - EX28DRAFT_4230 0.19 -1.2
35,339 - EX28DRAFT_4230 0.19 +0.9
35,339 - EX28DRAFT_4230 0.19 -1.3
35,339 - EX28DRAFT_4230 0.19 +0.4
35,339 - EX28DRAFT_4230 0.19 -0.2
35,339 - EX28DRAFT_4230 0.19 +0.7
35,339 - EX28DRAFT_4230 0.19 +0.6
35,339 - EX28DRAFT_4230 0.19 +0.4
35,463 + EX28DRAFT_4230 0.37 +0.0
35,622 - EX28DRAFT_4230 0.61 +0.3
35,784 + EX28DRAFT_4230 0.85 -0.3
35,960 + +1.0
36,222 - EX28DRAFT_4231 0.19 +1.7
36,302 + EX28DRAFT_4231 0.25 +0.4
36,308 + EX28DRAFT_4231 0.26 -0.6
36,380 + EX28DRAFT_4231 0.31 +0.6
36,383 + EX28DRAFT_4231 0.32 +0.6
36,665 - EX28DRAFT_4231 0.53 +1.4
36,684 + EX28DRAFT_4231 0.55 -1.4
36,684 + EX28DRAFT_4231 0.55 -0.1
36,854 + EX28DRAFT_4231 0.68 +0.3
36,855 - EX28DRAFT_4231 0.68 -1.4
36,855 - EX28DRAFT_4231 0.68 +0.5
36,899 + EX28DRAFT_4231 0.71 -2.2
36,900 - EX28DRAFT_4231 0.71 -0.0
36,900 - EX28DRAFT_4231 0.71 +0.6
36,941 + EX28DRAFT_4231 0.74 +0.3
36,941 + EX28DRAFT_4231 0.74 +1.4
36,942 - EX28DRAFT_4231 0.74 -0.3
36,942 - EX28DRAFT_4231 0.74 -0.1
37,021 + EX28DRAFT_4231 0.80 +0.4
37,021 + EX28DRAFT_4231 0.80 +0.1
37,021 + EX28DRAFT_4231 0.80 +0.2
37,025 + EX28DRAFT_4231 0.81 +1.5
37,026 - EX28DRAFT_4231 0.81 -2.0
37,043 + EX28DRAFT_4231 0.82 +0.3
37,143 - EX28DRAFT_4231 0.89 -0.1
37,340 + -1.2
37,340 + -2.2
37,341 - -0.9
37,401 + +0.4
37,402 - +0.7
37,402 - +0.5
37,486 + -0.6
37,555 + -0.1
37,591 - -0.1
37,641 - +0.2
37,672 - +0.8
37,685 + +0.1
37,715 - +0.8
37,715 - -0.3
37,773 + +0.3
37,797 - +0.0
37,904 + EX28DRAFT_4232 0.10 -1.2
37,905 - EX28DRAFT_4232 0.10 -0.5
38,024 + EX28DRAFT_4232 0.16 +0.5
38,025 - EX28DRAFT_4232 0.16 -0.2
38,025 - EX28DRAFT_4232 0.16 +0.0
38,025 - EX28DRAFT_4232 0.16 +0.5
38,025 - EX28DRAFT_4232 0.16 -1.7
38,025 - EX28DRAFT_4232 0.16 +0.2
38,027 + EX28DRAFT_4232 0.16 -0.2
38,027 + EX28DRAFT_4232 0.16 +1.6
38,027 + EX28DRAFT_4232 0.16 -0.7
38,027 + EX28DRAFT_4232 0.16 +0.8
38,028 - EX28DRAFT_4232 0.17 +0.1
38,028 - EX28DRAFT_4232 0.17 +0.4
38,031 + EX28DRAFT_4232 0.17 -0.7
38,031 + EX28DRAFT_4232 0.17 -0.3
38,031 + EX28DRAFT_4232 0.17 -0.3
38,111 + EX28DRAFT_4232 0.21 -0.4
38,115 + EX28DRAFT_4232 0.21 +0.8
38,115 + EX28DRAFT_4232 0.21 -0.3
38,115 + EX28DRAFT_4232 0.21 +0.1
38,115 + EX28DRAFT_4232 0.21 -0.3
38,115 + EX28DRAFT_4232 0.21 -0.7
38,116 - EX28DRAFT_4232 0.21 -0.3
38,116 - EX28DRAFT_4232 0.21 -2.7
38,116 - EX28DRAFT_4232 0.21 +0.5
38,116 - EX28DRAFT_4232 0.21 +0.2
38,116 - EX28DRAFT_4232 0.21 +0.3
38,116 - EX28DRAFT_4232 0.21 -0.7
38,116 - EX28DRAFT_4232 0.21 -0.3
38,116 - EX28DRAFT_4232 0.21 +0.1
38,118 - EX28DRAFT_4232 0.21 -0.6

Or see this region's nucleotide sequence