Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3616 and EX28DRAFT_3617 are separated by 257 nucleotides EX28DRAFT_3617 and EX28DRAFT_3618 are separated by 32 nucleotides EX28DRAFT_3618 and EX28DRAFT_3619 are separated by 66 nucleotides
EX28DRAFT_3616: EX28DRAFT_3616 - threonine synthase, at 275,764 to 277,050
_3616
EX28DRAFT_3617: EX28DRAFT_3617 - Protein of unknown function (DUF2502), at 277,308 to 277,610
_3617
EX28DRAFT_3618: EX28DRAFT_3618 - Uncharacterized protein conserved in bacteria, at 277,643 to 278,416
_3618
EX28DRAFT_3619: EX28DRAFT_3619 - amino acid carrier protein, at 278,483 to 279,913
_3619
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 276.807 kb on + strand, within EX28DRAFT_3616 at 276.808 kb on - strand, within EX28DRAFT_3616 at 276.808 kb on - strand, within EX28DRAFT_3616 at 276.920 kb on + strand, within EX28DRAFT_3616 at 277.087 kb on + strand at 277.112 kb on + strand at 277.200 kb on - strand at 277.267 kb on + strand at 277.313 kb on + strand at 277.393 kb on + strand, within EX28DRAFT_3617 at 277.394 kb on - strand, within EX28DRAFT_3617 at 277.394 kb on - strand, within EX28DRAFT_3617 at 277.403 kb on - strand, within EX28DRAFT_3617 at 277.428 kb on - strand, within EX28DRAFT_3617 at 277.488 kb on + strand, within EX28DRAFT_3617 at 277.489 kb on - strand, within EX28DRAFT_3617 at 277.489 kb on - strand, within EX28DRAFT_3617 at 277.644 kb on + strand at 277.704 kb on + strand at 277.890 kb on + strand, within EX28DRAFT_3618 at 277.890 kb on + strand, within EX28DRAFT_3618 at 277.890 kb on + strand, within EX28DRAFT_3618 at 277.891 kb on - strand, within EX28DRAFT_3618 at 277.891 kb on - strand, within EX28DRAFT_3618 at 277.891 kb on - strand, within EX28DRAFT_3618 at 277.891 kb on - strand, within EX28DRAFT_3618 at 277.893 kb on + strand, within EX28DRAFT_3618 at 277.894 kb on - strand, within EX28DRAFT_3618 at 277.894 kb on - strand, within EX28DRAFT_3618 at 277.986 kb on + strand, within EX28DRAFT_3618 at 278.155 kb on - strand, within EX28DRAFT_3618 at 278.155 kb on - strand, within EX28DRAFT_3618 at 278.168 kb on - strand, within EX28DRAFT_3618 at 278.299 kb on + strand, within EX28DRAFT_3618 at 278.328 kb on + strand, within EX28DRAFT_3618 at 278.416 kb on + strand at 278.477 kb on + strand at 278.485 kb on - strand at 278.669 kb on - strand, within EX28DRAFT_3619 at 278.732 kb on + strand, within EX28DRAFT_3619 at 278.732 kb on + strand, within EX28DRAFT_3619 at 278.733 kb on - strand, within EX28DRAFT_3619 at 278.788 kb on + strand, within EX28DRAFT_3619 at 278.789 kb on - strand, within EX28DRAFT_3619 at 278.806 kb on - strand, within EX28DRAFT_3619 at 278.811 kb on + strand, within EX28DRAFT_3619 at 278.989 kb on + strand, within EX28DRAFT_3619 at 279.211 kb on + strand, within EX28DRAFT_3619
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 276,807 + EX28DRAFT_3616 0.81 -2.7 276,808 - EX28DRAFT_3616 0.81 -3.6 276,808 - EX28DRAFT_3616 0.81 -3.2 276,920 + EX28DRAFT_3616 0.90 -0.2 277,087 + +1.5 277,112 + -0.3 277,200 - +1.1 277,267 + +0.1 277,313 + -0.4 277,393 + EX28DRAFT_3617 0.28 +0.2 277,394 - EX28DRAFT_3617 0.28 +1.8 277,394 - EX28DRAFT_3617 0.28 -0.5 277,403 - EX28DRAFT_3617 0.31 +0.5 277,428 - EX28DRAFT_3617 0.40 -0.2 277,488 + EX28DRAFT_3617 0.59 +0.0 277,489 - EX28DRAFT_3617 0.60 +0.2 277,489 - EX28DRAFT_3617 0.60 +0.5 277,644 + -0.3 277,704 + +0.2 277,890 + EX28DRAFT_3618 0.32 +0.5 277,890 + EX28DRAFT_3618 0.32 -0.3 277,890 + EX28DRAFT_3618 0.32 +1.3 277,891 - EX28DRAFT_3618 0.32 +0.3 277,891 - EX28DRAFT_3618 0.32 -1.1 277,891 - EX28DRAFT_3618 0.32 +0.9 277,891 - EX28DRAFT_3618 0.32 -1.0 277,893 + EX28DRAFT_3618 0.32 +0.7 277,894 - EX28DRAFT_3618 0.32 +0.2 277,894 - EX28DRAFT_3618 0.32 +0.7 277,986 + EX28DRAFT_3618 0.44 +0.3 278,155 - EX28DRAFT_3618 0.66 +2.2 278,155 - EX28DRAFT_3618 0.66 -0.4 278,168 - EX28DRAFT_3618 0.68 +0.1 278,299 + EX28DRAFT_3618 0.85 -0.4 278,328 + EX28DRAFT_3618 0.89 +0.1 278,416 + +1.6 278,477 + +0.5 278,485 - -1.3 278,669 - EX28DRAFT_3619 0.13 +0.0 278,732 + EX28DRAFT_3619 0.17 -0.1 278,732 + EX28DRAFT_3619 0.17 -0.8 278,733 - EX28DRAFT_3619 0.17 +0.0 278,788 + EX28DRAFT_3619 0.21 +1.1 278,789 - EX28DRAFT_3619 0.21 +0.4 278,806 - EX28DRAFT_3619 0.23 -0.4 278,811 + EX28DRAFT_3619 0.23 +0.7 278,989 + EX28DRAFT_3619 0.35 +0.1 279,211 + EX28DRAFT_3619 0.51 +1.3
Or see this region's nucleotide sequence