Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3551 and EX28DRAFT_3552 are separated by 1 nucleotides EX28DRAFT_3552 and EX28DRAFT_3553 are separated by 126 nucleotides EX28DRAFT_3553 and EX28DRAFT_3554 overlap by 10 nucleotides
EX28DRAFT_3551: EX28DRAFT_3551 - hypothetical protein, at 215,360 to 215,833
_3551
EX28DRAFT_3552: EX28DRAFT_3552 - Transcriptional regulatory protein, C terminal, at 215,835 to 216,575
_3552
EX28DRAFT_3553: EX28DRAFT_3553 - Uncharacterized secreted protein, at 216,702 to 217,658
_3553
EX28DRAFT_3554: EX28DRAFT_3554 - P pilus assembly protein, porin PapC, at 217,649 to 219,877
_3554
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.763 kb on + strand, within EX28DRAFT_3551 at 215.810 kb on + strand at 215.833 kb on + strand at 215.834 kb on - strand at 215.846 kb on - strand at 215.848 kb on + strand at 215.848 kb on + strand at 215.851 kb on + strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.953 kb on + strand, within EX28DRAFT_3552 at 215.954 kb on - strand, within EX28DRAFT_3552 at 216.051 kb on - strand, within EX28DRAFT_3552 at 216.272 kb on + strand, within EX28DRAFT_3552 at 216.352 kb on + strand, within EX28DRAFT_3552 at 216.467 kb on + strand, within EX28DRAFT_3552 at 216.467 kb on + strand, within EX28DRAFT_3552 at 216.515 kb on + strand at 216.515 kb on + strand at 216.516 kb on - strand at 216.575 kb on + strand at 216.585 kb on + strand at 216.622 kb on + strand at 216.788 kb on - strand at 217.055 kb on + strand, within EX28DRAFT_3553 at 217.078 kb on + strand, within EX28DRAFT_3553 at 217.078 kb on + strand, within EX28DRAFT_3553 at 217.213 kb on + strand, within EX28DRAFT_3553 at 217.213 kb on + strand, within EX28DRAFT_3553 at 217.214 kb on - strand, within EX28DRAFT_3553 at 217.214 kb on - strand, within EX28DRAFT_3553 at 217.219 kb on + strand, within EX28DRAFT_3553 at 217.220 kb on - strand, within EX28DRAFT_3553 at 217.220 kb on - strand, within EX28DRAFT_3553 at 217.220 kb on - strand, within EX28DRAFT_3553 at 217.222 kb on + strand, within EX28DRAFT_3553 at 217.222 kb on + strand, within EX28DRAFT_3553 at 217.399 kb on + strand, within EX28DRAFT_3553 at 217.400 kb on - strand, within EX28DRAFT_3553 at 217.568 kb on + strand at 217.569 kb on - strand at 217.636 kb on - strand at 217.682 kb on - strand at 217.780 kb on + strand at 217.781 kb on - strand at 217.901 kb on - strand, within EX28DRAFT_3554 at 217.913 kb on + strand, within EX28DRAFT_3554 at 218.140 kb on - strand, within EX28DRAFT_3554 at 218.264 kb on + strand, within EX28DRAFT_3554 at 218.265 kb on - strand, within EX28DRAFT_3554 at 218.466 kb on + strand, within EX28DRAFT_3554 at 218.524 kb on - strand, within EX28DRAFT_3554 at 218.533 kb on + strand, within EX28DRAFT_3554 at 218.533 kb on + strand, within EX28DRAFT_3554
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 215,763 + EX28DRAFT_3551 0.85 -0.5 215,810 + -0.0 215,833 + -0.8 215,834 - -1.0 215,846 - +1.8 215,848 + -0.0 215,848 + +0.3 215,851 + -0.4 215,852 - -0.6 215,852 - +1.2 215,852 - -0.1 215,852 - -1.4 215,953 + EX28DRAFT_3552 0.16 +0.2 215,954 - EX28DRAFT_3552 0.16 +1.4 216,051 - EX28DRAFT_3552 0.29 -1.1 216,272 + EX28DRAFT_3552 0.59 -0.1 216,352 + EX28DRAFT_3552 0.70 +0.4 216,467 + EX28DRAFT_3552 0.85 -0.8 216,467 + EX28DRAFT_3552 0.85 +0.8 216,515 + -0.8 216,515 + -0.7 216,516 - -0.4 216,575 + +0.4 216,585 + -1.7 216,622 + -0.8 216,788 - +1.4 217,055 + EX28DRAFT_3553 0.37 -0.1 217,078 + EX28DRAFT_3553 0.39 +0.3 217,078 + EX28DRAFT_3553 0.39 +0.9 217,213 + EX28DRAFT_3553 0.53 +0.3 217,213 + EX28DRAFT_3553 0.53 +0.0 217,214 - EX28DRAFT_3553 0.54 -0.2 217,214 - EX28DRAFT_3553 0.54 +0.9 217,219 + EX28DRAFT_3553 0.54 +1.2 217,220 - EX28DRAFT_3553 0.54 +0.7 217,220 - EX28DRAFT_3553 0.54 +0.5 217,220 - EX28DRAFT_3553 0.54 +0.0 217,222 + EX28DRAFT_3553 0.54 -0.4 217,222 + EX28DRAFT_3553 0.54 +0.9 217,399 + EX28DRAFT_3553 0.73 +1.3 217,400 - EX28DRAFT_3553 0.73 +0.3 217,568 + -0.3 217,569 - -0.5 217,636 - -0.6 217,682 - -3.0 217,780 + +0.1 217,781 - +0.1 217,901 - EX28DRAFT_3554 0.11 +0.2 217,913 + EX28DRAFT_3554 0.12 +0.6 218,140 - EX28DRAFT_3554 0.22 +0.7 218,264 + EX28DRAFT_3554 0.28 +0.9 218,265 - EX28DRAFT_3554 0.28 +0.2 218,466 + EX28DRAFT_3554 0.37 -0.3 218,524 - EX28DRAFT_3554 0.39 -2.0 218,533 + EX28DRAFT_3554 0.40 +0.9 218,533 + EX28DRAFT_3554 0.40 +0.5
Or see this region's nucleotide sequence