Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3269 and EX28DRAFT_3270 are separated by 123 nucleotides EX28DRAFT_3270 and EX28DRAFT_3271 are separated by 83 nucleotides EX28DRAFT_3271 and EX28DRAFT_3272 are separated by 92 nucleotides
EX28DRAFT_3269: EX28DRAFT_3269 - valyl-tRNA synthetase (EC 6.1.1.9), at 560,232 to 563,087
_3269
EX28DRAFT_3270: EX28DRAFT_3270 - N-acetylglutamate synthase and related acetyltransferases, at 563,211 to 563,714
_3270
EX28DRAFT_3271: EX28DRAFT_3271 - Zn-dependent alcohol dehydrogenases, at 563,798 to 564,817
_3271
EX28DRAFT_3272: EX28DRAFT_3272 - Dihydroxyacetone kinase, at 564,910 to 566,556
_3272
Position (kb) 563
564
565 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 563.168 kb on + strand at 563.171 kb on + strand at 563.172 kb on - strand at 563.181 kb on + strand at 563.181 kb on + strand at 563.181 kb on + strand at 563.181 kb on + strand at 563.182 kb on - strand at 563.205 kb on - strand at 563.210 kb on + strand at 563.210 kb on + strand at 563.285 kb on - strand, within EX28DRAFT_3270 at 563.491 kb on - strand, within EX28DRAFT_3270 at 563.573 kb on + strand, within EX28DRAFT_3270 at 563.574 kb on - strand, within EX28DRAFT_3270 at 563.583 kb on + strand, within EX28DRAFT_3270 at 563.648 kb on + strand, within EX28DRAFT_3270 at 563.670 kb on - strand at 563.712 kb on + strand at 563.749 kb on - strand at 563.808 kb on + strand at 563.859 kb on - strand at 563.874 kb on + strand at 563.895 kb on + strand at 563.895 kb on + strand at 563.896 kb on - strand at 563.896 kb on - strand at 563.896 kb on - strand at 563.906 kb on + strand, within EX28DRAFT_3271 at 564.103 kb on + strand, within EX28DRAFT_3271 at 564.103 kb on + strand, within EX28DRAFT_3271 at 564.104 kb on - strand, within EX28DRAFT_3271 at 564.540 kb on - strand, within EX28DRAFT_3271 at 564.892 kb on + strand at 564.925 kb on + strand at 564.925 kb on + strand at 564.937 kb on - strand at 564.994 kb on - strand at 565.161 kb on - strand, within EX28DRAFT_3272 at 565.321 kb on + strand, within EX28DRAFT_3272 at 565.389 kb on + strand, within EX28DRAFT_3272 at 565.390 kb on - strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.478 kb on + strand, within EX28DRAFT_3272 at 565.479 kb on - strand, within EX28DRAFT_3272 at 565.479 kb on - strand, within EX28DRAFT_3272 at 565.512 kb on - strand, within EX28DRAFT_3272
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 563,168 + +0.9 563,171 + +0.3 563,172 - -2.6 563,181 + +2.1 563,181 + +0.6 563,181 + -0.4 563,181 + -0.0 563,182 - +0.7 563,205 - -0.6 563,210 + +0.1 563,210 + +1.7 563,285 - EX28DRAFT_3270 0.15 -1.0 563,491 - EX28DRAFT_3270 0.56 -0.3 563,573 + EX28DRAFT_3270 0.72 +0.4 563,574 - EX28DRAFT_3270 0.72 +0.6 563,583 + EX28DRAFT_3270 0.74 -0.2 563,648 + EX28DRAFT_3270 0.87 +0.3 563,670 - -0.1 563,712 + -1.0 563,749 - -2.1 563,808 + -1.8 563,859 - +0.5 563,874 + -0.2 563,895 + +1.5 563,895 + -0.5 563,896 - -0.2 563,896 - -1.7 563,896 - -1.2 563,906 + EX28DRAFT_3271 0.11 +1.3 564,103 + EX28DRAFT_3271 0.30 +0.3 564,103 + EX28DRAFT_3271 0.30 +0.4 564,104 - EX28DRAFT_3271 0.30 -0.3 564,540 - EX28DRAFT_3271 0.73 +2.0 564,892 + +0.8 564,925 + -0.4 564,925 + +2.5 564,937 - -0.4 564,994 - -0.2 565,161 - EX28DRAFT_3272 0.15 -0.3 565,321 + EX28DRAFT_3272 0.25 -0.1 565,389 + EX28DRAFT_3272 0.29 +0.2 565,390 - EX28DRAFT_3272 0.29 +1.0 565,478 + EX28DRAFT_3272 0.34 +0.2 565,478 + EX28DRAFT_3272 0.34 -4.0 565,478 + EX28DRAFT_3272 0.34 -0.3 565,478 + EX28DRAFT_3272 0.34 +0.5 565,478 + EX28DRAFT_3272 0.34 -0.4 565,479 - EX28DRAFT_3272 0.35 -0.5 565,479 - EX28DRAFT_3272 0.35 +0.1 565,512 - EX28DRAFT_3272 0.37 +0.0
Or see this region's nucleotide sequence