Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2926 and EX28DRAFT_2927 are separated by 37 nucleotides EX28DRAFT_2927 and EX28DRAFT_2928 are separated by 121 nucleotides EX28DRAFT_2928 and EX28DRAFT_2929 are separated by 27 nucleotides
EX28DRAFT_2926: EX28DRAFT_2926 - Amino acid permeases, at 237,272 to 238,501
_2926
EX28DRAFT_2927: EX28DRAFT_2927 - Transcriptional regulators, at 238,539 to 239,009
_2927
EX28DRAFT_2928: EX28DRAFT_2928 - Putative threonine efflux protein, at 239,131 to 239,736
_2928
EX28DRAFT_2929: EX28DRAFT_2929 - Predicted acetyltransferase, at 239,764 to 240,036
_2929
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 237.548 kb on + strand, within EX28DRAFT_2926 at 237.581 kb on + strand, within EX28DRAFT_2926 at 237.779 kb on + strand, within EX28DRAFT_2926 at 237.780 kb on - strand, within EX28DRAFT_2926 at 237.780 kb on - strand, within EX28DRAFT_2926 at 237.955 kb on + strand, within EX28DRAFT_2926 at 238.050 kb on - strand, within EX28DRAFT_2926 at 238.050 kb on - strand, within EX28DRAFT_2926 at 238.347 kb on - strand, within EX28DRAFT_2926 at 238.407 kb on - strand at 238.407 kb on - strand at 238.499 kb on + strand at 238.604 kb on + strand, within EX28DRAFT_2927 at 238.605 kb on - strand, within EX28DRAFT_2927 at 238.605 kb on - strand, within EX28DRAFT_2927 at 238.956 kb on + strand, within EX28DRAFT_2927 at 238.974 kb on + strand at 239.136 kb on + strand at 239.136 kb on + strand at 239.137 kb on - strand at 239.172 kb on + strand at 239.306 kb on + strand, within EX28DRAFT_2928 at 239.595 kb on + strand, within EX28DRAFT_2928 at 239.595 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.606 kb on - strand, within EX28DRAFT_2928 at 239.606 kb on - strand, within EX28DRAFT_2928 at 239.669 kb on + strand, within EX28DRAFT_2928 at 239.711 kb on + strand at 239.717 kb on + strand at 239.717 kb on + strand at 239.718 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.797 kb on - strand, within EX28DRAFT_2929 at 239.965 kb on + strand, within EX28DRAFT_2929 at 239.966 kb on - strand, within EX28DRAFT_2929 at 239.966 kb on - strand, within EX28DRAFT_2929 at 240.006 kb on - strand, within EX28DRAFT_2929
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 237,548 + EX28DRAFT_2926 0.22 +1.2 237,581 + EX28DRAFT_2926 0.25 -0.3 237,779 + EX28DRAFT_2926 0.41 +0.7 237,780 - EX28DRAFT_2926 0.41 -0.4 237,780 - EX28DRAFT_2926 0.41 +0.8 237,955 + EX28DRAFT_2926 0.56 +0.1 238,050 - EX28DRAFT_2926 0.63 +0.7 238,050 - EX28DRAFT_2926 0.63 -0.6 238,347 - EX28DRAFT_2926 0.87 -0.3 238,407 - -0.6 238,407 - +0.6 238,499 + -0.0 238,604 + EX28DRAFT_2927 0.14 +0.1 238,605 - EX28DRAFT_2927 0.14 -0.3 238,605 - EX28DRAFT_2927 0.14 +1.5 238,956 + EX28DRAFT_2927 0.89 +0.9 238,974 + +3.1 239,136 + +0.8 239,136 + +0.3 239,137 - -0.0 239,172 + +0.4 239,306 + EX28DRAFT_2928 0.29 -0.2 239,595 + EX28DRAFT_2928 0.77 -0.2 239,595 + EX28DRAFT_2928 0.77 +0.3 239,605 + EX28DRAFT_2928 0.78 +2.4 239,605 + EX28DRAFT_2928 0.78 -1.7 239,605 + EX28DRAFT_2928 0.78 +2.1 239,606 - EX28DRAFT_2928 0.78 -0.2 239,606 - EX28DRAFT_2928 0.78 +0.3 239,669 + EX28DRAFT_2928 0.89 -0.1 239,711 + +0.8 239,717 + -0.1 239,717 + -3.3 239,718 - -0.5 239,784 - +0.7 239,784 - -1.9 239,797 - EX28DRAFT_2929 0.12 +1.4 239,965 + EX28DRAFT_2929 0.74 -0.4 239,966 - EX28DRAFT_2929 0.74 +0.1 239,966 - EX28DRAFT_2929 0.74 -0.5 240,006 - EX28DRAFT_2929 0.89 -0.3
Or see this region's nucleotide sequence