Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2741

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2740 and EX28DRAFT_2741 are separated by 20 nucleotidesEX28DRAFT_2741 and EX28DRAFT_2742 are separated by 97 nucleotidesEX28DRAFT_2742 and EX28DRAFT_2743 overlap by 7 nucleotides EX28DRAFT_2740: EX28DRAFT_2740 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 49,780 to 50,961 _2740 EX28DRAFT_2741: EX28DRAFT_2741 - Transcriptional regulator, at 50,982 to 51,869 _2741 EX28DRAFT_2742: EX28DRAFT_2742 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 51,967 to 52,569 _2742 EX28DRAFT_2743: EX28DRAFT_2743 - Methyltransferase domain, at 52,563 to 53,297 _2743 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.064 kb on - strand, within EX28DRAFT_2740at 50.083 kb on - strand, within EX28DRAFT_2740at 50.115 kb on - strand, within EX28DRAFT_2740at 50.120 kb on + strand, within EX28DRAFT_2740at 50.120 kb on + strand, within EX28DRAFT_2740at 50.120 kb on + strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.121 kb on - strand, within EX28DRAFT_2740at 50.169 kb on + strand, within EX28DRAFT_2740at 50.179 kb on + strand, within EX28DRAFT_2740at 50.260 kb on - strand, within EX28DRAFT_2740at 50.260 kb on - strand, within EX28DRAFT_2740at 50.261 kb on + strand, within EX28DRAFT_2740at 50.261 kb on + strand, within EX28DRAFT_2740at 50.261 kb on + strand, within EX28DRAFT_2740at 50.328 kb on + strand, within EX28DRAFT_2740at 50.329 kb on - strand, within EX28DRAFT_2740at 50.329 kb on - strand, within EX28DRAFT_2740at 50.330 kb on + strand, within EX28DRAFT_2740at 50.335 kb on - strand, within EX28DRAFT_2740at 50.362 kb on - strand, within EX28DRAFT_2740at 50.387 kb on - strand, within EX28DRAFT_2740at 50.457 kb on + strand, within EX28DRAFT_2740at 50.457 kb on + strand, within EX28DRAFT_2740at 50.458 kb on - strand, within EX28DRAFT_2740at 50.458 kb on - strand, within EX28DRAFT_2740at 50.458 kb on - strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.459 kb on + strand, within EX28DRAFT_2740at 50.460 kb on - strand, within EX28DRAFT_2740at 50.460 kb on - strand, within EX28DRAFT_2740at 50.585 kb on + strand, within EX28DRAFT_2740at 50.585 kb on + strand, within EX28DRAFT_2740at 50.670 kb on + strand, within EX28DRAFT_2740at 50.896 kb on + strandat 50.970 kb on + strandat 50.983 kb on + strandat 50.985 kb on + strandat 51.001 kb on - strandat 51.032 kb on + strandat 51.033 kb on - strandat 51.046 kb on - strandat 51.046 kb on - strandat 51.091 kb on + strand, within EX28DRAFT_2741at 51.091 kb on + strand, within EX28DRAFT_2741at 51.092 kb on - strand, within EX28DRAFT_2741at 51.400 kb on + strand, within EX28DRAFT_2741at 51.401 kb on - strand, within EX28DRAFT_2741at 51.438 kb on - strand, within EX28DRAFT_2741at 51.676 kb on + strand, within EX28DRAFT_2741at 51.763 kb on + strand, within EX28DRAFT_2741at 51.764 kb on - strand, within EX28DRAFT_2741at 51.839 kb on + strandat 51.864 kb on - strandat 51.954 kb on + strandat 51.954 kb on + strandat 51.954 kb on + strandat 51.955 kb on - strandat 51.955 kb on - strandat 51.966 kb on + strandat 51.981 kb on + strandat 52.165 kb on + strand, within EX28DRAFT_2742at 52.166 kb on - strand, within EX28DRAFT_2742at 52.264 kb on + strand, within EX28DRAFT_2742at 52.285 kb on - strand, within EX28DRAFT_2742at 52.350 kb on - strand, within EX28DRAFT_2742at 52.456 kb on + strand, within EX28DRAFT_2742at 52.553 kb on - strandat 52.553 kb on - strandat 52.554 kb on + strandat 52.787 kb on - strand, within EX28DRAFT_2743at 52.855 kb on + strand, within EX28DRAFT_2743at 52.855 kb on + strand, within EX28DRAFT_2743at 52.855 kb on + strand, within EX28DRAFT_2743at 52.855 kb on + strand, within EX28DRAFT_2743at 52.856 kb on - strand, within EX28DRAFT_2743

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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50,064 - EX28DRAFT_2740 0.24 -1.0
50,083 - EX28DRAFT_2740 0.26 -0.1
50,115 - EX28DRAFT_2740 0.28 +0.3
50,120 + EX28DRAFT_2740 0.29 -2.9
50,120 + EX28DRAFT_2740 0.29 +1.8
50,120 + EX28DRAFT_2740 0.29 +0.9
50,121 - EX28DRAFT_2740 0.29 +0.3
50,121 - EX28DRAFT_2740 0.29 -0.5
50,121 - EX28DRAFT_2740 0.29 +0.4
50,121 - EX28DRAFT_2740 0.29 +0.1
50,121 - EX28DRAFT_2740 0.29 -0.2
50,121 - EX28DRAFT_2740 0.29 -0.1
50,169 + EX28DRAFT_2740 0.33 +1.0
50,179 + EX28DRAFT_2740 0.34 -0.9
50,260 - EX28DRAFT_2740 0.41 -0.4
50,260 - EX28DRAFT_2740 0.41 +0.4
50,261 + EX28DRAFT_2740 0.41 +0.2
50,261 + EX28DRAFT_2740 0.41 +0.5
50,261 + EX28DRAFT_2740 0.41 +0.6
50,328 + EX28DRAFT_2740 0.46 -0.4
50,329 - EX28DRAFT_2740 0.46 +0.2
50,329 - EX28DRAFT_2740 0.46 +0.4
50,330 + EX28DRAFT_2740 0.47 -0.1
50,335 - EX28DRAFT_2740 0.47 +1.2
50,362 - EX28DRAFT_2740 0.49 +0.7
50,387 - EX28DRAFT_2740 0.51 +0.5
50,457 + EX28DRAFT_2740 0.57 +0.4
50,457 + EX28DRAFT_2740 0.57 +1.1
50,458 - EX28DRAFT_2740 0.57 +0.9
50,458 - EX28DRAFT_2740 0.57 +1.4
50,458 - EX28DRAFT_2740 0.57 +0.0
50,459 + EX28DRAFT_2740 0.57 -0.5
50,459 + EX28DRAFT_2740 0.57 -2.3
50,459 + EX28DRAFT_2740 0.57 +0.1
50,459 + EX28DRAFT_2740 0.57 -0.2
50,459 + EX28DRAFT_2740 0.57 +0.6
50,460 - EX28DRAFT_2740 0.58 +0.1
50,460 - EX28DRAFT_2740 0.58 -0.3
50,585 + EX28DRAFT_2740 0.68 -0.8
50,585 + EX28DRAFT_2740 0.68 +0.3
50,670 + EX28DRAFT_2740 0.75 +0.7
50,896 + -0.1
50,970 + +0.2
50,983 + -0.9
50,985 + -1.2
51,001 - +0.0
51,032 + +0.8
51,033 - -0.0
51,046 - +1.2
51,046 - +0.8
51,091 + EX28DRAFT_2741 0.12 +0.5
51,091 + EX28DRAFT_2741 0.12 +1.6
51,092 - EX28DRAFT_2741 0.12 +0.7
51,400 + EX28DRAFT_2741 0.47 +0.4
51,401 - EX28DRAFT_2741 0.47 -1.1
51,438 - EX28DRAFT_2741 0.51 +1.8
51,676 + EX28DRAFT_2741 0.78 +0.3
51,763 + EX28DRAFT_2741 0.88 +1.0
51,764 - EX28DRAFT_2741 0.88 -0.6
51,839 + -0.9
51,864 - -0.2
51,954 + -0.4
51,954 + -2.9
51,954 + +0.2
51,955 - -1.7
51,955 - +0.4
51,966 + +1.0
51,981 + -0.6
52,165 + EX28DRAFT_2742 0.33 -0.4
52,166 - EX28DRAFT_2742 0.33 +0.1
52,264 + EX28DRAFT_2742 0.49 +0.4
52,285 - EX28DRAFT_2742 0.53 +0.3
52,350 - EX28DRAFT_2742 0.64 -1.4
52,456 + EX28DRAFT_2742 0.81 -0.0
52,553 - +0.8
52,553 - +1.6
52,554 + +0.7
52,787 - EX28DRAFT_2743 0.30 -0.4
52,855 + EX28DRAFT_2743 0.40 +0.5
52,855 + EX28DRAFT_2743 0.40 -0.4
52,855 + EX28DRAFT_2743 0.40 -0.1
52,855 + EX28DRAFT_2743 0.40 +0.6
52,856 - EX28DRAFT_2743 0.40 -0.8

Or see this region's nucleotide sequence