Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2703

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2702 and EX28DRAFT_2703 are separated by 214 nucleotidesEX28DRAFT_2703 and EX28DRAFT_2704 are separated by 92 nucleotidesEX28DRAFT_2704 and EX28DRAFT_2705 overlap by 8 nucleotides EX28DRAFT_2702: EX28DRAFT_2702 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 9,883 to 10,953 _2702 EX28DRAFT_2703: EX28DRAFT_2703 - Protein of unknown function (DUF2799), at 11,168 to 11,542 _2703 EX28DRAFT_2704: EX28DRAFT_2704 - Domain of unknown function (DUF4154), at 11,635 to 12,231 _2704 EX28DRAFT_2705: EX28DRAFT_2705 - diguanylate cyclase (GGDEF) domain, at 12,224 to 13,444 _2705 Position (kb) 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 10.233 kb on + strand, within EX28DRAFT_2702at 10.233 kb on + strand, within EX28DRAFT_2702at 10.297 kb on + strand, within EX28DRAFT_2702at 10.297 kb on + strand, within EX28DRAFT_2702at 10.298 kb on - strand, within EX28DRAFT_2702at 10.689 kb on - strand, within EX28DRAFT_2702at 10.737 kb on - strand, within EX28DRAFT_2702at 10.780 kb on + strand, within EX28DRAFT_2702at 10.924 kb on - strandat 10.924 kb on - strandat 10.924 kb on - strandat 10.924 kb on - strandat 10.927 kb on + strandat 10.927 kb on + strandat 10.928 kb on - strandat 10.928 kb on - strandat 10.928 kb on - strandat 10.928 kb on - strandat 10.928 kb on - strandat 10.928 kb on - strandat 11.076 kb on + strandat 11.311 kb on + strand, within EX28DRAFT_2703at 11.364 kb on - strand, within EX28DRAFT_2703at 11.413 kb on + strand, within EX28DRAFT_2703at 11.518 kb on + strandat 11.518 kb on + strandat 11.540 kb on + strandat 11.545 kb on + strandat 11.576 kb on - strandat 11.588 kb on - strandat 11.604 kb on - strandat 11.614 kb on + strandat 11.615 kb on - strandat 11.657 kb on + strandat 11.657 kb on + strandat 11.667 kb on + strandat 11.668 kb on - strandat 11.668 kb on - strandat 11.668 kb on - strandat 11.668 kb on - strandat 11.754 kb on + strand, within EX28DRAFT_2704at 11.754 kb on + strand, within EX28DRAFT_2704at 11.755 kb on - strand, within EX28DRAFT_2704at 11.755 kb on - strand, within EX28DRAFT_2704at 11.784 kb on + strand, within EX28DRAFT_2704at 11.866 kb on - strand, within EX28DRAFT_2704at 11.896 kb on - strand, within EX28DRAFT_2704at 11.934 kb on - strand, within EX28DRAFT_2704at 11.939 kb on - strand, within EX28DRAFT_2704at 11.939 kb on - strand, within EX28DRAFT_2704at 11.941 kb on - strand, within EX28DRAFT_2704at 11.998 kb on + strand, within EX28DRAFT_2704at 12.066 kb on - strand, within EX28DRAFT_2704at 12.068 kb on + strand, within EX28DRAFT_2704at 12.138 kb on - strand, within EX28DRAFT_2704at 12.138 kb on - strand, within EX28DRAFT_2704at 12.180 kb on - strandat 12.198 kb on - strandat 12.198 kb on - strandat 12.216 kb on + strandat 12.217 kb on - strandat 12.230 kb on - strandat 12.291 kb on + strandat 12.291 kb on + strandat 12.315 kb on + strandat 12.316 kb on - strandat 12.319 kb on - strandat 12.503 kb on - strand, within EX28DRAFT_2705

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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10,233 + EX28DRAFT_2702 0.33 -1.6
10,233 + EX28DRAFT_2702 0.33 -3.1
10,297 + EX28DRAFT_2702 0.39 -0.4
10,297 + EX28DRAFT_2702 0.39 -1.2
10,298 - EX28DRAFT_2702 0.39 -0.8
10,689 - EX28DRAFT_2702 0.75 -0.4
10,737 - EX28DRAFT_2702 0.80 -0.4
10,780 + EX28DRAFT_2702 0.84 -2.0
10,924 - -3.0
10,924 - -2.0
10,924 - -0.6
10,924 - -1.2
10,927 + -2.2
10,927 + -2.3
10,928 - -0.8
10,928 - -0.5
10,928 - -0.4
10,928 - +0.4
10,928 - -1.1
10,928 - -3.0
11,076 + -1.0
11,311 + EX28DRAFT_2703 0.38 +1.9
11,364 - EX28DRAFT_2703 0.52 -1.8
11,413 + EX28DRAFT_2703 0.65 +0.2
11,518 + +0.1
11,518 + -1.9
11,540 + -0.9
11,545 + -0.6
11,576 - -0.8
11,588 - +0.2
11,604 - +0.4
11,614 + -0.7
11,615 - +0.2
11,657 + +0.4
11,657 + +0.0
11,667 + +1.4
11,668 - -0.6
11,668 - +0.2
11,668 - -0.8
11,668 - -0.2
11,754 + EX28DRAFT_2704 0.20 +0.3
11,754 + EX28DRAFT_2704 0.20 +1.4
11,755 - EX28DRAFT_2704 0.20 -0.6
11,755 - EX28DRAFT_2704 0.20 -2.2
11,784 + EX28DRAFT_2704 0.25 +0.3
11,866 - EX28DRAFT_2704 0.39 +1.1
11,896 - EX28DRAFT_2704 0.44 +1.4
11,934 - EX28DRAFT_2704 0.50 -0.2
11,939 - EX28DRAFT_2704 0.51 +0.0
11,939 - EX28DRAFT_2704 0.51 -1.8
11,941 - EX28DRAFT_2704 0.51 -0.2
11,998 + EX28DRAFT_2704 0.61 -0.3
12,066 - EX28DRAFT_2704 0.72 +0.4
12,068 + EX28DRAFT_2704 0.73 +1.2
12,138 - EX28DRAFT_2704 0.84 -0.6
12,138 - EX28DRAFT_2704 0.84 -0.9
12,180 - -0.2
12,198 - +1.3
12,198 - -0.2
12,216 + +0.5
12,217 - -0.9
12,230 - -0.3
12,291 + -0.3
12,291 + +0.9
12,315 + +0.0
12,316 - -0.1
12,319 - +1.5
12,503 - EX28DRAFT_2705 0.23 +0.1

Or see this region's nucleotide sequence