Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2697

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2696 and EX28DRAFT_2697 are separated by 274 nucleotidesEX28DRAFT_2697 and EX28DRAFT_2698 are separated by 110 nucleotidesEX28DRAFT_2698 and EX28DRAFT_2699 are separated by 30 nucleotides EX28DRAFT_2696: EX28DRAFT_2696 - Beta-barrel assembly machine subunit BamD, at 5,041 to 5,778 _2696 EX28DRAFT_2697: EX28DRAFT_2697 - ribosomal subunit interface protein, at 6,053 to 6,394 _2697 EX28DRAFT_2698: EX28DRAFT_2698 - RNA, at 6,505 to 6,630 _2698 EX28DRAFT_2699: EX28DRAFT_2699 - chorismate mutase (EC 5.4.99.5), at 6,661 to 7,821 _2699 Position (kb) 6 7Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5.839 kb on - strandat 5.883 kb on - strandat 6.002 kb on + strandat 6.003 kb on - strandat 6.046 kb on - strandat 6.212 kb on - strand, within EX28DRAFT_2697at 6.212 kb on - strand, within EX28DRAFT_2697at 6.212 kb on - strand, within EX28DRAFT_2697at 6.212 kb on - strand, within EX28DRAFT_2697at 6.217 kb on + strand, within EX28DRAFT_2697at 6.217 kb on + strand, within EX28DRAFT_2697at 6.260 kb on - strand, within EX28DRAFT_2697at 6.263 kb on + strand, within EX28DRAFT_2697at 6.264 kb on - strand, within EX28DRAFT_2697at 6.392 kb on + strandat 6.392 kb on + strandat 6.393 kb on - strandat 6.393 kb on - strandat 6.629 kb on - strandat 6.640 kb on + strandat 6.660 kb on + strandat 6.660 kb on + strandat 6.660 kb on + strandat 6.661 kb on - strandat 6.661 kb on - strandat 6.874 kb on + strand, within EX28DRAFT_2699at 6.875 kb on - strand, within EX28DRAFT_2699at 6.952 kb on - strand, within EX28DRAFT_2699at 7.004 kb on - strand, within EX28DRAFT_2699at 7.027 kb on + strand, within EX28DRAFT_2699at 7.028 kb on - strand, within EX28DRAFT_2699at 7.053 kb on + strand, within EX28DRAFT_2699at 7.168 kb on + strand, within EX28DRAFT_2699at 7.169 kb on - strand, within EX28DRAFT_2699

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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5,839 - +0.2
5,883 - -0.4
6,002 + +1.3
6,003 - -0.1
6,046 - +0.1
6,212 - EX28DRAFT_2697 0.46 +0.4
6,212 - EX28DRAFT_2697 0.46 -1.2
6,212 - EX28DRAFT_2697 0.46 -2.6
6,212 - EX28DRAFT_2697 0.46 +1.2
6,217 + EX28DRAFT_2697 0.48 +0.4
6,217 + EX28DRAFT_2697 0.48 +0.4
6,260 - EX28DRAFT_2697 0.61 +1.5
6,263 + EX28DRAFT_2697 0.61 -0.1
6,264 - EX28DRAFT_2697 0.62 +0.7
6,392 + +0.4
6,392 + -0.4
6,393 - +0.8
6,393 - +1.0
6,629 - -1.6
6,640 + +0.7
6,660 + -0.8
6,660 + -3.9
6,660 + -4.7
6,661 - -4.2
6,661 - -4.6
6,874 + EX28DRAFT_2699 0.18 -1.5
6,875 - EX28DRAFT_2699 0.18 -2.9
6,952 - EX28DRAFT_2699 0.25 -0.6
7,004 - EX28DRAFT_2699 0.30 -1.4
7,027 + EX28DRAFT_2699 0.32 -4.7
7,028 - EX28DRAFT_2699 0.32 -3.6
7,053 + EX28DRAFT_2699 0.34 -1.5
7,168 + EX28DRAFT_2699 0.44 -1.5
7,169 - EX28DRAFT_2699 0.44 -2.4

Or see this region's nucleotide sequence