Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2694

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2693 and EX28DRAFT_2694 are separated by 129 nucleotidesEX28DRAFT_2694 and EX28DRAFT_2695 overlap by 4 nucleotides EX28DRAFT_2693: EX28DRAFT_2693 - ATP-dependent chaperone ClpB, at 498 to 3,071 _2693 EX28DRAFT_2694: EX28DRAFT_2694 - YfiH family protein, at 3,201 to 3,932 _2694 EX28DRAFT_2695: EX28DRAFT_2695 - pseudouridine synthase, RluA family, at 3,929 to 4,909 _2695 Position (kb) 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.210 kb on + strand, within EX28DRAFT_2693at 2.321 kb on - strand, within EX28DRAFT_2693at 2.406 kb on - strand, within EX28DRAFT_2693at 2.494 kb on - strand, within EX28DRAFT_2693at 2.505 kb on - strand, within EX28DRAFT_2693at 2.580 kb on - strand, within EX28DRAFT_2693at 2.757 kb on - strand, within EX28DRAFT_2693at 2.757 kb on - strand, within EX28DRAFT_2693at 2.907 kb on - strandat 2.923 kb on - strandat 2.925 kb on + strandat 2.926 kb on - strandat 2.970 kb on + strandat 2.970 kb on + strandat 2.988 kb on - strandat 3.051 kb on - strandat 3.051 kb on - strandat 3.053 kb on + strandat 3.071 kb on + strandat 3.072 kb on - strandat 3.154 kb on + strandat 3.204 kb on + strandat 3.204 kb on + strandat 3.353 kb on + strand, within EX28DRAFT_2694at 3.365 kb on - strand, within EX28DRAFT_2694at 3.488 kb on + strand, within EX28DRAFT_2694at 3.489 kb on - strand, within EX28DRAFT_2694at 3.489 kb on - strand, within EX28DRAFT_2694at 3.650 kb on + strand, within EX28DRAFT_2694at 3.654 kb on - strand, within EX28DRAFT_2694at 3.658 kb on + strand, within EX28DRAFT_2694at 3.678 kb on - strand, within EX28DRAFT_2694at 3.685 kb on + strand, within EX28DRAFT_2694at 3.685 kb on + strand, within EX28DRAFT_2694at 3.879 kb on - strandat 3.952 kb on + strandat 3.952 kb on + strandat 3.953 kb on - strandat 3.986 kb on - strandat 3.998 kb on - strandat 4.213 kb on + strand, within EX28DRAFT_2695at 4.214 kb on - strand, within EX28DRAFT_2695at 4.376 kb on - strand, within EX28DRAFT_2695at 4.850 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,210 + EX28DRAFT_2693 0.67 -0.1
2,321 - EX28DRAFT_2693 0.71 +0.2
2,406 - EX28DRAFT_2693 0.74 -1.2
2,494 - EX28DRAFT_2693 0.78 -0.3
2,505 - EX28DRAFT_2693 0.78 -0.8
2,580 - EX28DRAFT_2693 0.81 +0.7
2,757 - EX28DRAFT_2693 0.88 +0.4
2,757 - EX28DRAFT_2693 0.88 -2.9
2,907 - -0.2
2,923 - -0.2
2,925 + +0.7
2,926 - +0.6
2,970 + -0.6
2,970 + +0.3
2,988 - -1.2
3,051 - +0.0
3,051 - -0.4
3,053 + -2.2
3,071 + -0.3
3,072 - -0.4
3,154 + +1.0
3,204 + +0.1
3,204 + -0.8
3,353 + EX28DRAFT_2694 0.21 -1.9
3,365 - EX28DRAFT_2694 0.22 +1.0
3,488 + EX28DRAFT_2694 0.39 +2.3
3,489 - EX28DRAFT_2694 0.39 +1.3
3,489 - EX28DRAFT_2694 0.39 +0.1
3,650 + EX28DRAFT_2694 0.61 +0.0
3,654 - EX28DRAFT_2694 0.62 -0.9
3,658 + EX28DRAFT_2694 0.62 +0.8
3,678 - EX28DRAFT_2694 0.65 -0.2
3,685 + EX28DRAFT_2694 0.66 +0.1
3,685 + EX28DRAFT_2694 0.66 -0.1
3,879 - +0.3
3,952 + +0.2
3,952 + +0.5
3,953 - -1.2
3,986 - -2.2
3,998 - -3.2
4,213 + EX28DRAFT_2695 0.29 +1.6
4,214 - EX28DRAFT_2695 0.29 +0.1
4,376 - EX28DRAFT_2695 0.46 -0.4
4,850 + +1.1

Or see this region's nucleotide sequence