Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2471 and EX28DRAFT_2472 overlap by 4 nucleotides EX28DRAFT_2472 and EX28DRAFT_2473 overlap by 4 nucleotides EX28DRAFT_2473 and EX28DRAFT_2474 are separated by 108 nucleotides EX28DRAFT_2474 and EX28DRAFT_2475 are separated by 50 nucleotides EX28DRAFT_2475 and EX28DRAFT_2476 overlap by 2 nucleotides
EX28DRAFT_2471: EX28DRAFT_2471 - Membrane protease subunits, stomatin/prohibitin homologs, at 2,500,249 to 2,501,163
_2471
EX28DRAFT_2472: EX28DRAFT_2472 - Membrane protein implicated in regulation of membrane protease activity, at 2,501,160 to 2,501,612
_2472
EX28DRAFT_2473: EX28DRAFT_2473 - Cu(I)-responsive transcriptional regulator, at 2,501,609 to 2,502,019
_2473
EX28DRAFT_2474: EX28DRAFT_2474 - copper-(or silver)-translocating P-type ATPase, at 2,502,128 to 2,504,626
_2474
EX28DRAFT_2475: EX28DRAFT_2475 - Uncharacterized protein conserved in bacteria, at 2,504,677 to 2,505,471
_2475
EX28DRAFT_2476: EX28DRAFT_2476 - RNA, at 2,505,470 to 2,505,548
_2476
Position (kb)
2502
2503
2504
2505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2501.462 kb on + strand, within EX28DRAFT_2472 at 2501.890 kb on + strand, within EX28DRAFT_2473 at 2501.961 kb on + strand, within EX28DRAFT_2473 at 2502.014 kb on - strand at 2502.063 kb on + strand at 2502.064 kb on - strand at 2502.097 kb on - strand at 2502.097 kb on - strand at 2502.113 kb on + strand at 2502.114 kb on - strand at 2502.139 kb on + strand at 2502.321 kb on + strand at 2502.837 kb on - strand, within EX28DRAFT_2474 at 2502.920 kb on + strand, within EX28DRAFT_2474 at 2502.921 kb on - strand, within EX28DRAFT_2474 at 2502.921 kb on - strand, within EX28DRAFT_2474 at 2502.925 kb on + strand, within EX28DRAFT_2474 at 2502.977 kb on + strand, within EX28DRAFT_2474 at 2502.980 kb on + strand, within EX28DRAFT_2474 at 2502.981 kb on - strand, within EX28DRAFT_2474 at 2502.981 kb on - strand, within EX28DRAFT_2474 at 2503.083 kb on + strand, within EX28DRAFT_2474 at 2504.208 kb on + strand, within EX28DRAFT_2474 at 2504.371 kb on + strand, within EX28DRAFT_2474 at 2504.467 kb on + strand at 2504.468 kb on - strand at 2504.468 kb on - strand at 2504.471 kb on + strand at 2504.471 kb on + strand at 2504.471 kb on + strand at 2504.472 kb on - strand at 2504.473 kb on + strand at 2504.474 kb on - strand at 2504.474 kb on - strand at 2504.695 kb on - strand at 2504.696 kb on + strand at 2504.696 kb on + strand at 2504.814 kb on + strand, within EX28DRAFT_2475 at 2504.814 kb on + strand, within EX28DRAFT_2475 at 2504.815 kb on - strand, within EX28DRAFT_2475 at 2504.840 kb on + strand, within EX28DRAFT_2475 at 2504.841 kb on - strand, within EX28DRAFT_2475 at 2505.219 kb on + strand, within EX28DRAFT_2475 at 2505.337 kb on + strand, within EX28DRAFT_2475 at 2505.338 kb on - strand, within EX28DRAFT_2475 at 2505.338 kb on - strand, within EX28DRAFT_2475 at 2505.406 kb on + strand at 2505.406 kb on + strand at 2505.429 kb on - strand at 2505.437 kb on - strand at 2505.437 kb on - strand at 2505.484 kb on + strand, within EX28DRAFT_2476 at 2505.491 kb on - strand, within EX28DRAFT_2476 at 2505.491 kb on - strand, within EX28DRAFT_2476 at 2505.527 kb on - strand, within EX28DRAFT_2476 at 2505.527 kb on - strand, within EX28DRAFT_2476 at 2505.585 kb on + strand at 2505.588 kb on + strand at 2505.589 kb on - strand at 2505.606 kb on + strand at 2505.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,501,462 + EX28DRAFT_2472 0.67 -1.4 2,501,890 + EX28DRAFT_2473 0.68 -2.4 2,501,961 + EX28DRAFT_2473 0.86 +0.2 2,502,014 - +1.5 2,502,063 + -0.1 2,502,064 - -1.3 2,502,097 - -1.6 2,502,097 - +0.7 2,502,113 + +0.6 2,502,114 - +1.6 2,502,139 + -0.1 2,502,321 + -0.7 2,502,837 - EX28DRAFT_2474 0.28 -0.7 2,502,920 + EX28DRAFT_2474 0.32 -1.1 2,502,921 - EX28DRAFT_2474 0.32 -2.3 2,502,921 - EX28DRAFT_2474 0.32 -0.3 2,502,925 + EX28DRAFT_2474 0.32 -0.3 2,502,977 + EX28DRAFT_2474 0.34 +0.3 2,502,980 + EX28DRAFT_2474 0.34 -0.8 2,502,981 - EX28DRAFT_2474 0.34 +0.1 2,502,981 - EX28DRAFT_2474 0.34 -2.0 2,503,083 + EX28DRAFT_2474 0.38 -1.3 2,504,208 + EX28DRAFT_2474 0.83 -0.5 2,504,371 + EX28DRAFT_2474 0.90 -2.2 2,504,467 + +0.6 2,504,468 - -2.5 2,504,468 - +0.2 2,504,471 + -0.2 2,504,471 + +0.6 2,504,471 + -0.4 2,504,472 - -1.9 2,504,473 + +0.5 2,504,474 - -1.4 2,504,474 - -1.4 2,504,695 - +0.0 2,504,696 + -0.3 2,504,696 + +0.2 2,504,814 + EX28DRAFT_2475 0.17 +0.3 2,504,814 + EX28DRAFT_2475 0.17 -0.1 2,504,815 - EX28DRAFT_2475 0.17 -1.2 2,504,840 + EX28DRAFT_2475 0.21 +0.9 2,504,841 - EX28DRAFT_2475 0.21 +1.8 2,505,219 + EX28DRAFT_2475 0.68 -0.8 2,505,337 + EX28DRAFT_2475 0.83 -0.6 2,505,338 - EX28DRAFT_2475 0.83 +1.5 2,505,338 - EX28DRAFT_2475 0.83 +1.1 2,505,406 + -0.5 2,505,406 + +0.3 2,505,429 - +1.1 2,505,437 - +0.4 2,505,437 - +0.3 2,505,484 + EX28DRAFT_2476 0.18 +0.0 2,505,491 - EX28DRAFT_2476 0.27 -2.0 2,505,491 - EX28DRAFT_2476 0.27 +0.6 2,505,527 - EX28DRAFT_2476 0.72 +1.2 2,505,527 - EX28DRAFT_2476 0.72 -1.3 2,505,585 + -0.7 2,505,588 + -0.5 2,505,589 - -0.1 2,505,606 + +0.7 2,505,606 + -0.7
Or see this region's nucleotide sequence