Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2197

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2195 and EX28DRAFT_2196 overlap by 4 nucleotidesEX28DRAFT_2196 and EX28DRAFT_2197 overlap by 8 nucleotidesEX28DRAFT_2197 and EX28DRAFT_2198 overlap by 11 nucleotides EX28DRAFT_2195: EX28DRAFT_2195 - transcriptional regulator, TetR family, at 2,219,102 to 2,219,779 _2195 EX28DRAFT_2196: EX28DRAFT_2196 - Multidrug resistance efflux pump, at 2,219,776 to 2,220,771 _2196 EX28DRAFT_2197: EX28DRAFT_2197 - ABC-type multidrug transport system, ATPase component, at 2,220,764 to 2,222,503 _2197 EX28DRAFT_2198: EX28DRAFT_2198 - ABC-type multidrug transport system, permease component, at 2,222,493 to 2,223,626 _2198 Position (kb) 2220 2221 2222 2223Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2219.866 kb on - strandat 2219.895 kb on + strand, within EX28DRAFT_2196at 2219.911 kb on - strand, within EX28DRAFT_2196at 2220.064 kb on + strand, within EX28DRAFT_2196at 2220.065 kb on - strand, within EX28DRAFT_2196at 2220.124 kb on - strand, within EX28DRAFT_2196at 2220.278 kb on + strand, within EX28DRAFT_2196at 2220.279 kb on - strand, within EX28DRAFT_2196at 2220.393 kb on - strand, within EX28DRAFT_2196at 2220.562 kb on + strand, within EX28DRAFT_2196at 2220.564 kb on + strand, within EX28DRAFT_2196at 2220.564 kb on + strand, within EX28DRAFT_2196at 2220.740 kb on + strandat 2220.740 kb on + strandat 2220.863 kb on + strandat 2221.013 kb on + strand, within EX28DRAFT_2197at 2221.013 kb on + strand, within EX28DRAFT_2197at 2221.037 kb on + strand, within EX28DRAFT_2197at 2221.139 kb on - strand, within EX28DRAFT_2197at 2221.269 kb on + strand, within EX28DRAFT_2197at 2221.270 kb on - strand, within EX28DRAFT_2197at 2221.629 kb on + strand, within EX28DRAFT_2197at 2221.720 kb on + strand, within EX28DRAFT_2197at 2221.720 kb on + strand, within EX28DRAFT_2197at 2221.721 kb on - strand, within EX28DRAFT_2197at 2221.979 kb on + strand, within EX28DRAFT_2197at 2221.979 kb on + strand, within EX28DRAFT_2197at 2221.980 kb on - strand, within EX28DRAFT_2197at 2221.981 kb on + strand, within EX28DRAFT_2197at 2221.981 kb on + strand, within EX28DRAFT_2197at 2221.981 kb on + strand, within EX28DRAFT_2197at 2221.982 kb on - strand, within EX28DRAFT_2197at 2222.158 kb on + strand, within EX28DRAFT_2197at 2222.336 kb on + strandat 2222.501 kb on + strandat 2222.615 kb on + strand, within EX28DRAFT_2198at 2222.616 kb on - strand, within EX28DRAFT_2198at 2222.634 kb on - strand, within EX28DRAFT_2198at 2222.846 kb on + strand, within EX28DRAFT_2198at 2222.847 kb on - strand, within EX28DRAFT_2198at 2222.870 kb on + strand, within EX28DRAFT_2198at 2223.039 kb on - strand, within EX28DRAFT_2198at 2223.062 kb on + strand, within EX28DRAFT_2198at 2223.192 kb on + strand, within EX28DRAFT_2198at 2223.195 kb on + strand, within EX28DRAFT_2198at 2223.196 kb on - strand, within EX28DRAFT_2198at 2223.196 kb on - strand, within EX28DRAFT_2198at 2223.196 kb on - strand, within EX28DRAFT_2198at 2223.196 kb on - strand, within EX28DRAFT_2198at 2223.308 kb on - strand, within EX28DRAFT_2198at 2223.441 kb on - strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.473 kb on + strand, within EX28DRAFT_2198

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,219,866 - -1.4
2,219,895 + EX28DRAFT_2196 0.12 -3.8
2,219,911 - EX28DRAFT_2196 0.14 +0.9
2,220,064 + EX28DRAFT_2196 0.29 +1.4
2,220,065 - EX28DRAFT_2196 0.29 +0.7
2,220,124 - EX28DRAFT_2196 0.35 -0.1
2,220,278 + EX28DRAFT_2196 0.50 +0.6
2,220,279 - EX28DRAFT_2196 0.51 -1.4
2,220,393 - EX28DRAFT_2196 0.62 +0.7
2,220,562 + EX28DRAFT_2196 0.79 +1.4
2,220,564 + EX28DRAFT_2196 0.79 -0.1
2,220,564 + EX28DRAFT_2196 0.79 -1.2
2,220,740 + -0.3
2,220,740 + -3.0
2,220,863 + +0.4
2,221,013 + EX28DRAFT_2197 0.14 +0.8
2,221,013 + EX28DRAFT_2197 0.14 -0.2
2,221,037 + EX28DRAFT_2197 0.16 +0.8
2,221,139 - EX28DRAFT_2197 0.22 +0.9
2,221,269 + EX28DRAFT_2197 0.29 +0.3
2,221,270 - EX28DRAFT_2197 0.29 -1.1
2,221,629 + EX28DRAFT_2197 0.50 +1.1
2,221,720 + EX28DRAFT_2197 0.55 -0.9
2,221,720 + EX28DRAFT_2197 0.55 +1.5
2,221,721 - EX28DRAFT_2197 0.55 +0.9
2,221,979 + EX28DRAFT_2197 0.70 +0.3
2,221,979 + EX28DRAFT_2197 0.70 -0.8
2,221,980 - EX28DRAFT_2197 0.70 +1.2
2,221,981 + EX28DRAFT_2197 0.70 -0.2
2,221,981 + EX28DRAFT_2197 0.70 -0.0
2,221,981 + EX28DRAFT_2197 0.70 +0.6
2,221,982 - EX28DRAFT_2197 0.70 -0.6
2,222,158 + EX28DRAFT_2197 0.80 -1.8
2,222,336 + -1.3
2,222,501 + +0.2
2,222,615 + EX28DRAFT_2198 0.11 +1.6
2,222,616 - EX28DRAFT_2198 0.11 -1.8
2,222,634 - EX28DRAFT_2198 0.12 -1.8
2,222,846 + EX28DRAFT_2198 0.31 +0.5
2,222,847 - EX28DRAFT_2198 0.31 +0.4
2,222,870 + EX28DRAFT_2198 0.33 -1.7
2,223,039 - EX28DRAFT_2198 0.48 +0.5
2,223,062 + EX28DRAFT_2198 0.50 -0.1
2,223,192 + EX28DRAFT_2198 0.62 +0.2
2,223,195 + EX28DRAFT_2198 0.62 -1.1
2,223,196 - EX28DRAFT_2198 0.62 +0.4
2,223,196 - EX28DRAFT_2198 0.62 -1.0
2,223,196 - EX28DRAFT_2198 0.62 +0.1
2,223,196 - EX28DRAFT_2198 0.62 +0.6
2,223,308 - EX28DRAFT_2198 0.72 +0.5
2,223,441 - EX28DRAFT_2198 0.84 +0.5
2,223,468 + EX28DRAFT_2198 0.86 +0.2
2,223,468 + EX28DRAFT_2198 0.86 +0.4
2,223,468 + EX28DRAFT_2198 0.86 +0.3
2,223,468 + EX28DRAFT_2198 0.86 +1.4
2,223,468 + EX28DRAFT_2198 0.86 +0.1
2,223,469 - EX28DRAFT_2198 0.86 +0.9
2,223,469 - EX28DRAFT_2198 0.86 +0.0
2,223,469 - EX28DRAFT_2198 0.86 +0.4
2,223,469 - EX28DRAFT_2198 0.86 -1.1
2,223,469 - EX28DRAFT_2198 0.86 -0.1
2,223,469 - EX28DRAFT_2198 0.86 +0.3
2,223,469 - EX28DRAFT_2198 0.86 +3.5
2,223,469 - EX28DRAFT_2198 0.86 +0.1
2,223,473 + EX28DRAFT_2198 0.86 +1.0

Or see this region's nucleotide sequence