Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2195 and EX28DRAFT_2196 overlap by 4 nucleotides EX28DRAFT_2196 and EX28DRAFT_2197 overlap by 8 nucleotides EX28DRAFT_2197 and EX28DRAFT_2198 overlap by 11 nucleotides
EX28DRAFT_2195: EX28DRAFT_2195 - transcriptional regulator, TetR family, at 2,219,102 to 2,219,779
_2195
EX28DRAFT_2196: EX28DRAFT_2196 - Multidrug resistance efflux pump, at 2,219,776 to 2,220,771
_2196
EX28DRAFT_2197: EX28DRAFT_2197 - ABC-type multidrug transport system, ATPase component, at 2,220,764 to 2,222,503
_2197
EX28DRAFT_2198: EX28DRAFT_2198 - ABC-type multidrug transport system, permease component, at 2,222,493 to 2,223,626
_2198
Position (kb)
2220
2221
2222
2223 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2219.866 kb on - strand at 2219.895 kb on + strand, within EX28DRAFT_2196 at 2219.911 kb on - strand, within EX28DRAFT_2196 at 2220.064 kb on + strand, within EX28DRAFT_2196 at 2220.065 kb on - strand, within EX28DRAFT_2196 at 2220.124 kb on - strand, within EX28DRAFT_2196 at 2220.278 kb on + strand, within EX28DRAFT_2196 at 2220.279 kb on - strand, within EX28DRAFT_2196 at 2220.393 kb on - strand, within EX28DRAFT_2196 at 2220.562 kb on + strand, within EX28DRAFT_2196 at 2220.564 kb on + strand, within EX28DRAFT_2196 at 2220.564 kb on + strand, within EX28DRAFT_2196 at 2220.740 kb on + strand at 2220.740 kb on + strand at 2220.863 kb on + strand at 2221.013 kb on + strand, within EX28DRAFT_2197 at 2221.013 kb on + strand, within EX28DRAFT_2197 at 2221.037 kb on + strand, within EX28DRAFT_2197 at 2221.139 kb on - strand, within EX28DRAFT_2197 at 2221.269 kb on + strand, within EX28DRAFT_2197 at 2221.270 kb on - strand, within EX28DRAFT_2197 at 2221.629 kb on + strand, within EX28DRAFT_2197 at 2221.720 kb on + strand, within EX28DRAFT_2197 at 2221.720 kb on + strand, within EX28DRAFT_2197 at 2221.721 kb on - strand, within EX28DRAFT_2197 at 2221.979 kb on + strand, within EX28DRAFT_2197 at 2221.979 kb on + strand, within EX28DRAFT_2197 at 2221.980 kb on - strand, within EX28DRAFT_2197 at 2221.981 kb on + strand, within EX28DRAFT_2197 at 2221.981 kb on + strand, within EX28DRAFT_2197 at 2221.981 kb on + strand, within EX28DRAFT_2197 at 2221.982 kb on - strand, within EX28DRAFT_2197 at 2222.158 kb on + strand, within EX28DRAFT_2197 at 2222.336 kb on + strand at 2222.501 kb on + strand at 2222.615 kb on + strand, within EX28DRAFT_2198 at 2222.616 kb on - strand, within EX28DRAFT_2198 at 2222.634 kb on - strand, within EX28DRAFT_2198 at 2222.846 kb on + strand, within EX28DRAFT_2198 at 2222.847 kb on - strand, within EX28DRAFT_2198 at 2222.870 kb on + strand, within EX28DRAFT_2198 at 2223.039 kb on - strand, within EX28DRAFT_2198 at 2223.062 kb on + strand, within EX28DRAFT_2198 at 2223.192 kb on + strand, within EX28DRAFT_2198 at 2223.195 kb on + strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.308 kb on - strand, within EX28DRAFT_2198 at 2223.441 kb on - strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.473 kb on + strand, within EX28DRAFT_2198
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,219,866 - -1.4 2,219,895 + EX28DRAFT_2196 0.12 -3.8 2,219,911 - EX28DRAFT_2196 0.14 +0.9 2,220,064 + EX28DRAFT_2196 0.29 +1.4 2,220,065 - EX28DRAFT_2196 0.29 +0.7 2,220,124 - EX28DRAFT_2196 0.35 -0.1 2,220,278 + EX28DRAFT_2196 0.50 +0.6 2,220,279 - EX28DRAFT_2196 0.51 -1.4 2,220,393 - EX28DRAFT_2196 0.62 +0.7 2,220,562 + EX28DRAFT_2196 0.79 +1.4 2,220,564 + EX28DRAFT_2196 0.79 -0.1 2,220,564 + EX28DRAFT_2196 0.79 -1.2 2,220,740 + -0.3 2,220,740 + -3.0 2,220,863 + +0.4 2,221,013 + EX28DRAFT_2197 0.14 +0.8 2,221,013 + EX28DRAFT_2197 0.14 -0.2 2,221,037 + EX28DRAFT_2197 0.16 +0.8 2,221,139 - EX28DRAFT_2197 0.22 +0.9 2,221,269 + EX28DRAFT_2197 0.29 +0.3 2,221,270 - EX28DRAFT_2197 0.29 -1.1 2,221,629 + EX28DRAFT_2197 0.50 +1.1 2,221,720 + EX28DRAFT_2197 0.55 -0.9 2,221,720 + EX28DRAFT_2197 0.55 +1.5 2,221,721 - EX28DRAFT_2197 0.55 +0.9 2,221,979 + EX28DRAFT_2197 0.70 +0.3 2,221,979 + EX28DRAFT_2197 0.70 -0.8 2,221,980 - EX28DRAFT_2197 0.70 +1.2 2,221,981 + EX28DRAFT_2197 0.70 -0.2 2,221,981 + EX28DRAFT_2197 0.70 -0.0 2,221,981 + EX28DRAFT_2197 0.70 +0.6 2,221,982 - EX28DRAFT_2197 0.70 -0.6 2,222,158 + EX28DRAFT_2197 0.80 -1.8 2,222,336 + -1.3 2,222,501 + +0.2 2,222,615 + EX28DRAFT_2198 0.11 +1.6 2,222,616 - EX28DRAFT_2198 0.11 -1.8 2,222,634 - EX28DRAFT_2198 0.12 -1.8 2,222,846 + EX28DRAFT_2198 0.31 +0.5 2,222,847 - EX28DRAFT_2198 0.31 +0.4 2,222,870 + EX28DRAFT_2198 0.33 -1.7 2,223,039 - EX28DRAFT_2198 0.48 +0.5 2,223,062 + EX28DRAFT_2198 0.50 -0.1 2,223,192 + EX28DRAFT_2198 0.62 +0.2 2,223,195 + EX28DRAFT_2198 0.62 -1.1 2,223,196 - EX28DRAFT_2198 0.62 +0.4 2,223,196 - EX28DRAFT_2198 0.62 -1.0 2,223,196 - EX28DRAFT_2198 0.62 +0.1 2,223,196 - EX28DRAFT_2198 0.62 +0.6 2,223,308 - EX28DRAFT_2198 0.72 +0.5 2,223,441 - EX28DRAFT_2198 0.84 +0.5 2,223,468 + EX28DRAFT_2198 0.86 +0.2 2,223,468 + EX28DRAFT_2198 0.86 +0.4 2,223,468 + EX28DRAFT_2198 0.86 +0.3 2,223,468 + EX28DRAFT_2198 0.86 +1.4 2,223,468 + EX28DRAFT_2198 0.86 +0.1 2,223,469 - EX28DRAFT_2198 0.86 +0.9 2,223,469 - EX28DRAFT_2198 0.86 +0.0 2,223,469 - EX28DRAFT_2198 0.86 +0.4 2,223,469 - EX28DRAFT_2198 0.86 -1.1 2,223,469 - EX28DRAFT_2198 0.86 -0.1 2,223,469 - EX28DRAFT_2198 0.86 +0.3 2,223,469 - EX28DRAFT_2198 0.86 +3.5 2,223,469 - EX28DRAFT_2198 0.86 +0.1 2,223,473 + EX28DRAFT_2198 0.86 +1.0
Or see this region's nucleotide sequence