Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2129

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2127 and EX28DRAFT_2128 are separated by 240 nucleotidesEX28DRAFT_2128 and EX28DRAFT_2129 are separated by 0 nucleotidesEX28DRAFT_2129 and EX28DRAFT_2130 are separated by 107 nucleotidesEX28DRAFT_2130 and EX28DRAFT_2131 are separated by 216 nucleotides EX28DRAFT_2127: EX28DRAFT_2127 - D-alanyl-D-alanine carboxypeptidase, at 2,145,451 to 2,146,656 _2127 EX28DRAFT_2128: EX28DRAFT_2128 - Glutathione S-transferase, at 2,146,897 to 2,147,523 _2128 EX28DRAFT_2129: EX28DRAFT_2129 - Glucose/sorbosone dehydrogenases, at 2,147,524 to 2,148,642 _2129 EX28DRAFT_2130: EX28DRAFT_2130 - Biofilm formation protein (YliH/bssR), at 2,148,750 to 2,149,133 _2130 EX28DRAFT_2131: EX28DRAFT_2131 - ribosomal protein S12 methylthiotransferase RimO, at 2,149,350 to 2,150,675 _2131 Position (kb) 2147 2148 2149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2146.656 kb on + strandat 2146.656 kb on + strandat 2146.657 kb on - strandat 2146.657 kb on - strandat 2146.720 kb on + strandat 2146.720 kb on + strandat 2146.783 kb on - strandat 2146.832 kb on + strandat 2146.845 kb on + strandat 2146.846 kb on - strandat 2146.892 kb on + strandat 2146.893 kb on - strandat 2146.893 kb on - strandat 2146.893 kb on - strandat 2146.896 kb on + strandat 2146.896 kb on + strandat 2146.897 kb on - strandat 2146.897 kb on - strandat 2146.897 kb on - strandat 2147.026 kb on + strand, within EX28DRAFT_2128at 2147.026 kb on + strand, within EX28DRAFT_2128at 2147.248 kb on - strand, within EX28DRAFT_2128at 2147.344 kb on - strand, within EX28DRAFT_2128at 2147.582 kb on + strandat 2147.583 kb on - strandat 2147.583 kb on - strandat 2147.583 kb on - strandat 2147.583 kb on - strandat 2147.584 kb on + strandat 2147.584 kb on + strandat 2147.584 kb on + strandat 2147.584 kb on + strandat 2147.584 kb on + strandat 2147.584 kb on + strandat 2147.585 kb on - strandat 2147.585 kb on - strandat 2147.585 kb on - strandat 2147.585 kb on - strandat 2147.585 kb on - strandat 2147.585 kb on - strandat 2147.620 kb on - strandat 2147.620 kb on - strandat 2147.861 kb on + strand, within EX28DRAFT_2129at 2147.861 kb on + strand, within EX28DRAFT_2129at 2147.862 kb on - strand, within EX28DRAFT_2129at 2147.866 kb on - strand, within EX28DRAFT_2129at 2147.894 kb on + strand, within EX28DRAFT_2129at 2148.112 kb on - strand, within EX28DRAFT_2129at 2148.141 kb on + strand, within EX28DRAFT_2129at 2148.265 kb on - strand, within EX28DRAFT_2129at 2148.504 kb on + strand, within EX28DRAFT_2129at 2148.505 kb on - strand, within EX28DRAFT_2129at 2148.642 kb on + strandat 2148.671 kb on - strandat 2148.719 kb on - strandat 2148.883 kb on - strand, within EX28DRAFT_2130at 2149.034 kb on + strand, within EX28DRAFT_2130at 2149.034 kb on + strand, within EX28DRAFT_2130at 2149.035 kb on - strand, within EX28DRAFT_2130at 2149.035 kb on - strand, within EX28DRAFT_2130at 2149.035 kb on - strand, within EX28DRAFT_2130at 2149.036 kb on + strand, within EX28DRAFT_2130at 2149.037 kb on - strand, within EX28DRAFT_2130at 2149.037 kb on - strand, within EX28DRAFT_2130at 2149.037 kb on - strand, within EX28DRAFT_2130at 2149.164 kb on + strandat 2149.233 kb on - strandat 2149.236 kb on + strandat 2149.237 kb on - strandat 2149.237 kb on - strandat 2149.282 kb on + strandat 2149.283 kb on - strandat 2149.283 kb on - strandat 2149.283 kb on - strandat 2149.284 kb on + strandat 2149.284 kb on + strandat 2149.285 kb on - strandat 2149.285 kb on - strandat 2149.298 kb on + strandat 2149.305 kb on + strandat 2149.330 kb on - strandat 2149.474 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,146,656 + -0.3
2,146,656 + +0.2
2,146,657 - +0.8
2,146,657 - -0.5
2,146,720 + -1.5
2,146,720 + -0.1
2,146,783 - -1.5
2,146,832 + +0.2
2,146,845 + +0.9
2,146,846 - -2.6
2,146,892 + +0.4
2,146,893 - +0.5
2,146,893 - +1.5
2,146,893 - -2.2
2,146,896 + +2.1
2,146,896 + +1.7
2,146,897 - -1.8
2,146,897 - +1.9
2,146,897 - -0.3
2,147,026 + EX28DRAFT_2128 0.21 -0.4
2,147,026 + EX28DRAFT_2128 0.21 +0.2
2,147,248 - EX28DRAFT_2128 0.56 -1.8
2,147,344 - EX28DRAFT_2128 0.71 -2.1
2,147,582 + -0.1
2,147,583 - -0.3
2,147,583 - -0.2
2,147,583 - -0.7
2,147,583 - -1.9
2,147,584 + -0.4
2,147,584 + +0.1
2,147,584 + +0.5
2,147,584 + +0.3
2,147,584 + +0.6
2,147,584 + -0.4
2,147,585 - +0.1
2,147,585 - +0.1
2,147,585 - -2.7
2,147,585 - +1.1
2,147,585 - -0.8
2,147,585 - +0.0
2,147,620 - +0.1
2,147,620 - -0.2
2,147,861 + EX28DRAFT_2129 0.30 -1.1
2,147,861 + EX28DRAFT_2129 0.30 -0.9
2,147,862 - EX28DRAFT_2129 0.30 +1.8
2,147,866 - EX28DRAFT_2129 0.31 +0.6
2,147,894 + EX28DRAFT_2129 0.33 +1.0
2,148,112 - EX28DRAFT_2129 0.53 +0.2
2,148,141 + EX28DRAFT_2129 0.55 +0.1
2,148,265 - EX28DRAFT_2129 0.66 +0.2
2,148,504 + EX28DRAFT_2129 0.88 +0.4
2,148,505 - EX28DRAFT_2129 0.88 +1.6
2,148,642 + -0.9
2,148,671 - -0.8
2,148,719 - -0.7
2,148,883 - EX28DRAFT_2130 0.35 -1.1
2,149,034 + EX28DRAFT_2130 0.74 +0.2
2,149,034 + EX28DRAFT_2130 0.74 -1.3
2,149,035 - EX28DRAFT_2130 0.74 -1.1
2,149,035 - EX28DRAFT_2130 0.74 -0.4
2,149,035 - EX28DRAFT_2130 0.74 -2.7
2,149,036 + EX28DRAFT_2130 0.74 -0.4
2,149,037 - EX28DRAFT_2130 0.75 +0.2
2,149,037 - EX28DRAFT_2130 0.75 -0.4
2,149,037 - EX28DRAFT_2130 0.75 -0.5
2,149,164 + -2.9
2,149,233 - -1.2
2,149,236 + +0.9
2,149,237 - +1.7
2,149,237 - -0.0
2,149,282 + +0.4
2,149,283 - +0.9
2,149,283 - -0.4
2,149,283 - +0.4
2,149,284 + +0.2
2,149,284 + +0.7
2,149,285 - -1.0
2,149,285 - -2.2
2,149,298 + +0.8
2,149,305 + +1.5
2,149,330 - +0.3
2,149,474 - +0.2

Or see this region's nucleotide sequence