Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2061

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2060 and EX28DRAFT_2061 are separated by 90 nucleotidesEX28DRAFT_2061 and EX28DRAFT_2062 are separated by 151 nucleotides EX28DRAFT_2060: EX28DRAFT_2060 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 2,083,269 to 2,084,237 _2060 EX28DRAFT_2061: EX28DRAFT_2061 - Predicted membrane protein, at 2,084,328 to 2,084,762 _2061 EX28DRAFT_2062: EX28DRAFT_2062 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase], at 2,084,914 to 2,086,632 _2062 Position (kb) 2084 2085Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2083.368 kb on + strand, within EX28DRAFT_2060at 2083.369 kb on - strand, within EX28DRAFT_2060at 2083.369 kb on - strand, within EX28DRAFT_2060at 2083.372 kb on - strand, within EX28DRAFT_2060at 2083.437 kb on + strand, within EX28DRAFT_2060at 2083.438 kb on - strand, within EX28DRAFT_2060at 2083.470 kb on + strand, within EX28DRAFT_2060at 2083.471 kb on - strand, within EX28DRAFT_2060at 2083.476 kb on - strand, within EX28DRAFT_2060at 2083.476 kb on - strand, within EX28DRAFT_2060at 2083.548 kb on + strand, within EX28DRAFT_2060at 2083.548 kb on + strand, within EX28DRAFT_2060at 2083.548 kb on + strand, within EX28DRAFT_2060at 2083.549 kb on - strand, within EX28DRAFT_2060at 2083.549 kb on - strand, within EX28DRAFT_2060at 2083.550 kb on + strand, within EX28DRAFT_2060at 2083.550 kb on + strand, within EX28DRAFT_2060at 2083.550 kb on + strand, within EX28DRAFT_2060at 2083.550 kb on + strand, within EX28DRAFT_2060at 2083.551 kb on - strand, within EX28DRAFT_2060at 2083.551 kb on - strand, within EX28DRAFT_2060at 2083.551 kb on - strand, within EX28DRAFT_2060at 2083.604 kb on + strand, within EX28DRAFT_2060at 2083.711 kb on + strand, within EX28DRAFT_2060at 2083.712 kb on - strand, within EX28DRAFT_2060at 2083.712 kb on - strand, within EX28DRAFT_2060at 2083.712 kb on - strand, within EX28DRAFT_2060at 2083.712 kb on - strand, within EX28DRAFT_2060at 2083.884 kb on + strand, within EX28DRAFT_2060at 2083.885 kb on - strand, within EX28DRAFT_2060at 2083.893 kb on - strand, within EX28DRAFT_2060at 2083.985 kb on + strand, within EX28DRAFT_2060at 2083.986 kb on - strand, within EX28DRAFT_2060at 2084.111 kb on + strand, within EX28DRAFT_2060at 2084.136 kb on + strand, within EX28DRAFT_2060at 2084.137 kb on - strand, within EX28DRAFT_2060at 2084.138 kb on + strand, within EX28DRAFT_2060at 2084.139 kb on - strand, within EX28DRAFT_2060at 2084.188 kb on - strandat 2084.236 kb on - strandat 2084.303 kb on + strandat 2084.319 kb on - strandat 2084.319 kb on - strandat 2084.407 kb on + strand, within EX28DRAFT_2061at 2084.408 kb on - strand, within EX28DRAFT_2061at 2084.408 kb on - strand, within EX28DRAFT_2061at 2084.436 kb on + strand, within EX28DRAFT_2061at 2084.437 kb on - strand, within EX28DRAFT_2061at 2084.437 kb on - strand, within EX28DRAFT_2061at 2084.541 kb on - strand, within EX28DRAFT_2061at 2084.811 kb on - strandat 2084.834 kb on + strandat 2084.882 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.935 kb on + strandat 2084.936 kb on - strandat 2084.936 kb on - strandat 2084.936 kb on - strandat 2084.936 kb on - strandat 2084.937 kb on + strandat 2084.937 kb on + strandat 2084.937 kb on + strandat 2084.938 kb on - strandat 2084.938 kb on - strandat 2084.938 kb on - strandat 2084.938 kb on - strandat 2084.939 kb on + strandat 2084.939 kb on + strandat 2084.940 kb on - strandat 2084.973 kb on + strandat 2084.973 kb on + strandat 2084.974 kb on - strandat 2084.974 kb on - strandat 2085.102 kb on - strand, within EX28DRAFT_2062at 2085.292 kb on + strand, within EX28DRAFT_2062at 2085.638 kb on - strand, within EX28DRAFT_2062at 2085.649 kb on + strand, within EX28DRAFT_2062at 2085.650 kb on - strand, within EX28DRAFT_2062

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,083,368 + EX28DRAFT_2060 0.10 +0.9
2,083,369 - EX28DRAFT_2060 0.10 -3.3
2,083,369 - EX28DRAFT_2060 0.10 -2.5
2,083,372 - EX28DRAFT_2060 0.11 +0.4
2,083,437 + EX28DRAFT_2060 0.17 -0.2
2,083,438 - EX28DRAFT_2060 0.17 -1.5
2,083,470 + EX28DRAFT_2060 0.21 +0.2
2,083,471 - EX28DRAFT_2060 0.21 +0.8
2,083,476 - EX28DRAFT_2060 0.21 -0.1
2,083,476 - EX28DRAFT_2060 0.21 +0.7
2,083,548 + EX28DRAFT_2060 0.29 -0.2
2,083,548 + EX28DRAFT_2060 0.29 +0.7
2,083,548 + EX28DRAFT_2060 0.29 +0.3
2,083,549 - EX28DRAFT_2060 0.29 -0.9
2,083,549 - EX28DRAFT_2060 0.29 +0.1
2,083,550 + EX28DRAFT_2060 0.29 +0.5
2,083,550 + EX28DRAFT_2060 0.29 +0.2
2,083,550 + EX28DRAFT_2060 0.29 +1.2
2,083,550 + EX28DRAFT_2060 0.29 -0.0
2,083,551 - EX28DRAFT_2060 0.29 +2.3
2,083,551 - EX28DRAFT_2060 0.29 +1.8
2,083,551 - EX28DRAFT_2060 0.29 -0.2
2,083,604 + EX28DRAFT_2060 0.35 +1.7
2,083,711 + EX28DRAFT_2060 0.46 +0.9
2,083,712 - EX28DRAFT_2060 0.46 +0.1
2,083,712 - EX28DRAFT_2060 0.46 -0.5
2,083,712 - EX28DRAFT_2060 0.46 +1.2
2,083,712 - EX28DRAFT_2060 0.46 -0.7
2,083,884 + EX28DRAFT_2060 0.63 +0.9
2,083,885 - EX28DRAFT_2060 0.64 +0.1
2,083,893 - EX28DRAFT_2060 0.64 +1.0
2,083,985 + EX28DRAFT_2060 0.74 -0.9
2,083,986 - EX28DRAFT_2060 0.74 -0.4
2,084,111 + EX28DRAFT_2060 0.87 -2.1
2,084,136 + EX28DRAFT_2060 0.89 +1.0
2,084,137 - EX28DRAFT_2060 0.90 +0.1
2,084,138 + EX28DRAFT_2060 0.90 -0.6
2,084,139 - EX28DRAFT_2060 0.90 +0.1
2,084,188 - -2.7
2,084,236 - -1.9
2,084,303 + -0.5
2,084,319 - -0.1
2,084,319 - -0.3
2,084,407 + EX28DRAFT_2061 0.18 -0.4
2,084,408 - EX28DRAFT_2061 0.18 -0.4
2,084,408 - EX28DRAFT_2061 0.18 +1.1
2,084,436 + EX28DRAFT_2061 0.25 -0.1
2,084,437 - EX28DRAFT_2061 0.25 -0.1
2,084,437 - EX28DRAFT_2061 0.25 -3.3
2,084,541 - EX28DRAFT_2061 0.49 +0.5
2,084,811 - +0.5
2,084,834 + -0.8
2,084,882 + +0.1
2,084,935 + +0.7
2,084,935 + -0.0
2,084,935 + +1.2
2,084,935 + -0.8
2,084,935 + +1.1
2,084,935 + +0.5
2,084,935 + -2.5
2,084,935 + +0.1
2,084,935 + +1.5
2,084,935 + -2.5
2,084,936 - +1.7
2,084,936 - -1.3
2,084,936 - -0.4
2,084,936 - -0.3
2,084,937 + -3.6
2,084,937 + +0.4
2,084,937 + +0.7
2,084,938 - +0.9
2,084,938 - -1.6
2,084,938 - -0.1
2,084,938 - +0.2
2,084,939 + -0.2
2,084,939 + -1.0
2,084,940 - -0.4
2,084,973 + -0.5
2,084,973 + +0.9
2,084,974 - -1.6
2,084,974 - -2.2
2,085,102 - EX28DRAFT_2062 0.11 -0.1
2,085,292 + EX28DRAFT_2062 0.22 +0.4
2,085,638 - EX28DRAFT_2062 0.42 -0.5
2,085,649 + EX28DRAFT_2062 0.43 +2.4
2,085,650 - EX28DRAFT_2062 0.43 -1.9

Or see this region's nucleotide sequence