Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1884 and EX28DRAFT_1885 are separated by 106 nucleotides EX28DRAFT_1885 and EX28DRAFT_1886 are separated by 164 nucleotides EX28DRAFT_1886 and EX28DRAFT_1887 are separated by 61 nucleotides EX28DRAFT_1887 and EX28DRAFT_1888 are separated by 41 nucleotides
EX28DRAFT_1884: EX28DRAFT_1884 - Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1, at 1,897,562 to 1,898,104
_1884
EX28DRAFT_1885: EX28DRAFT_1885 - hypothetical protein, at 1,898,211 to 1,898,531
_1885
EX28DRAFT_1886: EX28DRAFT_1886 - Thin aggregative fimbriae synthesis protein, at 1,898,696 to 1,899,028
_1886
EX28DRAFT_1887: EX28DRAFT_1887 - Curlin associated repeat, at 1,899,090 to 1,899,542
_1887
EX28DRAFT_1888: EX28DRAFT_1888 - Curlin associated repeat, at 1,899,584 to 1,900,039
_1888
Position (kb) 1899
1900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1898.104 kb on + strand at 1898.134 kb on - strand at 1898.139 kb on + strand at 1898.260 kb on + strand, within EX28DRAFT_1885 at 1898.261 kb on - strand, within EX28DRAFT_1885 at 1898.261 kb on - strand, within EX28DRAFT_1885 at 1898.268 kb on - strand, within EX28DRAFT_1885 at 1898.320 kb on + strand, within EX28DRAFT_1885 at 1898.321 kb on - strand, within EX28DRAFT_1885 at 1898.342 kb on + strand, within EX28DRAFT_1885 at 1898.522 kb on - strand at 1898.522 kb on - strand at 1898.534 kb on + strand at 1898.538 kb on + strand at 1898.538 kb on + strand at 1898.539 kb on - strand at 1898.643 kb on + strand at 1898.643 kb on + strand at 1898.643 kb on + strand at 1898.644 kb on - strand at 1898.644 kb on - strand at 1898.644 kb on - strand at 1898.644 kb on - strand at 1898.795 kb on - strand, within EX28DRAFT_1886 at 1898.813 kb on + strand, within EX28DRAFT_1886 at 1898.813 kb on + strand, within EX28DRAFT_1886 at 1898.814 kb on - strand, within EX28DRAFT_1886 at 1898.839 kb on + strand, within EX28DRAFT_1886 at 1898.840 kb on - strand, within EX28DRAFT_1886 at 1898.892 kb on - strand, within EX28DRAFT_1886 at 1898.899 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.947 kb on + strand, within EX28DRAFT_1886 at 1898.948 kb on - strand, within EX28DRAFT_1886 at 1898.959 kb on + strand, within EX28DRAFT_1886 at 1899.017 kb on + strand at 1899.023 kb on - strand at 1899.074 kb on - strand at 1899.095 kb on - strand at 1899.408 kb on - strand, within EX28DRAFT_1887 at 1899.476 kb on + strand, within EX28DRAFT_1887 at 1899.476 kb on + strand, within EX28DRAFT_1887 at 1899.489 kb on - strand, within EX28DRAFT_1887 at 1899.709 kb on + strand, within EX28DRAFT_1888 at 1899.730 kb on + strand, within EX28DRAFT_1888 at 1899.731 kb on - strand, within EX28DRAFT_1888 at 1899.809 kb on - strand, within EX28DRAFT_1888 at 1900.065 kb on - strand at 1900.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,898,104 + -2.9 1,898,134 - -0.3 1,898,139 + -0.0 1,898,260 + EX28DRAFT_1885 0.15 -1.2 1,898,261 - EX28DRAFT_1885 0.16 +0.6 1,898,261 - EX28DRAFT_1885 0.16 -0.3 1,898,268 - EX28DRAFT_1885 0.18 -1.2 1,898,320 + EX28DRAFT_1885 0.34 +0.8 1,898,321 - EX28DRAFT_1885 0.34 -1.0 1,898,342 + EX28DRAFT_1885 0.41 +1.1 1,898,522 - -1.1 1,898,522 - +0.7 1,898,534 + -1.6 1,898,538 + -0.4 1,898,538 + -1.4 1,898,539 - -2.2 1,898,643 + -2.0 1,898,643 + -0.6 1,898,643 + +3.4 1,898,644 - -1.1 1,898,644 - +1.5 1,898,644 - +0.3 1,898,644 - +0.8 1,898,795 - EX28DRAFT_1886 0.30 +0.8 1,898,813 + EX28DRAFT_1886 0.35 +0.2 1,898,813 + EX28DRAFT_1886 0.35 -0.2 1,898,814 - EX28DRAFT_1886 0.35 +1.7 1,898,839 + EX28DRAFT_1886 0.43 -1.6 1,898,840 - EX28DRAFT_1886 0.43 +0.8 1,898,892 - EX28DRAFT_1886 0.59 +0.2 1,898,899 + EX28DRAFT_1886 0.61 +0.7 1,898,947 + EX28DRAFT_1886 0.75 -0.4 1,898,947 + EX28DRAFT_1886 0.75 +0.1 1,898,947 + EX28DRAFT_1886 0.75 +0.2 1,898,947 + EX28DRAFT_1886 0.75 -2.5 1,898,947 + EX28DRAFT_1886 0.75 +0.1 1,898,948 - EX28DRAFT_1886 0.76 -3.0 1,898,959 + EX28DRAFT_1886 0.79 +1.8 1,899,017 + +1.6 1,899,023 - -0.5 1,899,074 - +0.3 1,899,095 - -0.2 1,899,408 - EX28DRAFT_1887 0.70 -0.0 1,899,476 + EX28DRAFT_1887 0.85 +0.1 1,899,476 + EX28DRAFT_1887 0.85 +0.3 1,899,489 - EX28DRAFT_1887 0.88 +1.4 1,899,709 + EX28DRAFT_1888 0.27 +0.6 1,899,730 + EX28DRAFT_1888 0.32 -0.7 1,899,731 - EX28DRAFT_1888 0.32 +0.0 1,899,809 - EX28DRAFT_1888 0.49 -4.0 1,900,065 - +0.4 1,900,286 + +0.1
Or see this region's nucleotide sequence