Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1868

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1867 and EX28DRAFT_1868 are separated by 123 nucleotidesEX28DRAFT_1868 and EX28DRAFT_1869 are separated by 126 nucleotides EX28DRAFT_1867: EX28DRAFT_1867 - Arabinose efflux permease, at 1,880,994 to 1,882,202 _1867 EX28DRAFT_1868: EX28DRAFT_1868 - Protein of unknown function (DUF1439), at 1,882,326 to 1,882,886 _1868 EX28DRAFT_1869: EX28DRAFT_1869 - dihydroorotase (EC 3.5.2.3), at 1,883,013 to 1,884,059 _1869 Position (kb) 1882 1883Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1881.474 kb on + strand, within EX28DRAFT_1867at 1881.515 kb on + strand, within EX28DRAFT_1867at 1881.630 kb on + strand, within EX28DRAFT_1867at 1881.630 kb on + strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.654 kb on + strand, within EX28DRAFT_1867at 1881.654 kb on + strand, within EX28DRAFT_1867at 1881.654 kb on + strand, within EX28DRAFT_1867at 1881.654 kb on + strand, within EX28DRAFT_1867at 1881.655 kb on - strand, within EX28DRAFT_1867at 1881.655 kb on - strand, within EX28DRAFT_1867at 1881.655 kb on - strand, within EX28DRAFT_1867at 1881.728 kb on + strand, within EX28DRAFT_1867at 1881.738 kb on + strand, within EX28DRAFT_1867at 1881.738 kb on + strand, within EX28DRAFT_1867at 1881.739 kb on - strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.915 kb on + strand, within EX28DRAFT_1867at 1881.916 kb on - strand, within EX28DRAFT_1867at 1881.916 kb on - strand, within EX28DRAFT_1867at 1881.916 kb on - strand, within EX28DRAFT_1867at 1881.916 kb on - strand, within EX28DRAFT_1867at 1881.916 kb on - strand, within EX28DRAFT_1867at 1881.916 kb on - strand, within EX28DRAFT_1867at 1881.916 kb on - strand, within EX28DRAFT_1867at 1881.993 kb on + strand, within EX28DRAFT_1867at 1881.993 kb on + strand, within EX28DRAFT_1867at 1881.993 kb on + strand, within EX28DRAFT_1867at 1881.993 kb on + strand, within EX28DRAFT_1867at 1881.994 kb on - strand, within EX28DRAFT_1867at 1881.994 kb on - strand, within EX28DRAFT_1867at 1881.994 kb on - strand, within EX28DRAFT_1867at 1881.994 kb on - strand, within EX28DRAFT_1867at 1881.994 kb on - strand, within EX28DRAFT_1867at 1881.994 kb on - strand, within EX28DRAFT_1867at 1882.279 kb on + strandat 1882.279 kb on + strandat 1882.279 kb on + strandat 1882.280 kb on - strandat 1882.325 kb on + strandat 1882.325 kb on + strandat 1882.325 kb on + strandat 1882.355 kb on - strandat 1882.400 kb on + strand, within EX28DRAFT_1868at 1882.738 kb on - strand, within EX28DRAFT_1868at 1882.761 kb on + strand, within EX28DRAFT_1868at 1882.783 kb on - strand, within EX28DRAFT_1868at 1882.841 kb on + strandat 1882.842 kb on - strandat 1882.843 kb on + strandat 1882.865 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
1,881,474 + EX28DRAFT_1867 0.40 +0.9
1,881,515 + EX28DRAFT_1867 0.43 +1.1
1,881,630 + EX28DRAFT_1867 0.53 -1.5
1,881,630 + EX28DRAFT_1867 0.53 +2.9
1,881,631 - EX28DRAFT_1867 0.53 +1.7
1,881,631 - EX28DRAFT_1867 0.53 -0.5
1,881,631 - EX28DRAFT_1867 0.53 +0.6
1,881,631 - EX28DRAFT_1867 0.53 +0.4
1,881,631 - EX28DRAFT_1867 0.53 +0.9
1,881,631 - EX28DRAFT_1867 0.53 +1.5
1,881,654 + EX28DRAFT_1867 0.55 +0.1
1,881,654 + EX28DRAFT_1867 0.55 -0.1
1,881,654 + EX28DRAFT_1867 0.55 +0.5
1,881,654 + EX28DRAFT_1867 0.55 -0.1
1,881,655 - EX28DRAFT_1867 0.55 -0.2
1,881,655 - EX28DRAFT_1867 0.55 +0.3
1,881,655 - EX28DRAFT_1867 0.55 +0.7
1,881,728 + EX28DRAFT_1867 0.61 -1.5
1,881,738 + EX28DRAFT_1867 0.62 -2.9
1,881,738 + EX28DRAFT_1867 0.62 +0.0
1,881,739 - EX28DRAFT_1867 0.62 -1.5
1,881,915 + EX28DRAFT_1867 0.76 +0.6
1,881,915 + EX28DRAFT_1867 0.76 -0.3
1,881,915 + EX28DRAFT_1867 0.76 +1.9
1,881,915 + EX28DRAFT_1867 0.76 +0.1
1,881,915 + EX28DRAFT_1867 0.76 +0.6
1,881,915 + EX28DRAFT_1867 0.76 -0.0
1,881,915 + EX28DRAFT_1867 0.76 -0.1
1,881,915 + EX28DRAFT_1867 0.76 -0.5
1,881,915 + EX28DRAFT_1867 0.76 -0.0
1,881,916 - EX28DRAFT_1867 0.76 +2.2
1,881,916 - EX28DRAFT_1867 0.76 +0.1
1,881,916 - EX28DRAFT_1867 0.76 -1.4
1,881,916 - EX28DRAFT_1867 0.76 -3.1
1,881,916 - EX28DRAFT_1867 0.76 +0.2
1,881,916 - EX28DRAFT_1867 0.76 +0.7
1,881,916 - EX28DRAFT_1867 0.76 -0.1
1,881,993 + EX28DRAFT_1867 0.83 +0.2
1,881,993 + EX28DRAFT_1867 0.83 -1.9
1,881,993 + EX28DRAFT_1867 0.83 -0.8
1,881,993 + EX28DRAFT_1867 0.83 +1.0
1,881,994 - EX28DRAFT_1867 0.83 +1.0
1,881,994 - EX28DRAFT_1867 0.83 +0.1
1,881,994 - EX28DRAFT_1867 0.83 +0.7
1,881,994 - EX28DRAFT_1867 0.83 -0.1
1,881,994 - EX28DRAFT_1867 0.83 -2.5
1,881,994 - EX28DRAFT_1867 0.83 -0.1
1,882,279 + +0.7
1,882,279 + +0.8
1,882,279 + -0.1
1,882,280 - +1.1
1,882,325 + +1.5
1,882,325 + +1.6
1,882,325 + -0.5
1,882,355 - -2.6
1,882,400 + EX28DRAFT_1868 0.13 -0.1
1,882,738 - EX28DRAFT_1868 0.73 +1.9
1,882,761 + EX28DRAFT_1868 0.78 +1.0
1,882,783 - EX28DRAFT_1868 0.81 +0.7
1,882,841 + -1.6
1,882,842 - +0.8
1,882,843 + +0.1
1,882,865 + -0.6

Or see this region's nucleotide sequence