Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1867 and EX28DRAFT_1868 are separated by 123 nucleotides EX28DRAFT_1868 and EX28DRAFT_1869 are separated by 126 nucleotides
EX28DRAFT_1867: EX28DRAFT_1867 - Arabinose efflux permease, at 1,880,994 to 1,882,202
_1867
EX28DRAFT_1868: EX28DRAFT_1868 - Protein of unknown function (DUF1439), at 1,882,326 to 1,882,886
_1868
EX28DRAFT_1869: EX28DRAFT_1869 - dihydroorotase (EC 3.5.2.3), at 1,883,013 to 1,884,059
_1869
Position (kb)
1882
1883 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1881.474 kb on + strand, within EX28DRAFT_1867 at 1881.515 kb on + strand, within EX28DRAFT_1867 at 1881.630 kb on + strand, within EX28DRAFT_1867 at 1881.630 kb on + strand, within EX28DRAFT_1867 at 1881.631 kb on - strand, within EX28DRAFT_1867 at 1881.631 kb on - strand, within EX28DRAFT_1867 at 1881.631 kb on - strand, within EX28DRAFT_1867 at 1881.631 kb on - strand, within EX28DRAFT_1867 at 1881.631 kb on - strand, within EX28DRAFT_1867 at 1881.631 kb on - strand, within EX28DRAFT_1867 at 1881.654 kb on + strand, within EX28DRAFT_1867 at 1881.654 kb on + strand, within EX28DRAFT_1867 at 1881.654 kb on + strand, within EX28DRAFT_1867 at 1881.654 kb on + strand, within EX28DRAFT_1867 at 1881.655 kb on - strand, within EX28DRAFT_1867 at 1881.655 kb on - strand, within EX28DRAFT_1867 at 1881.655 kb on - strand, within EX28DRAFT_1867 at 1881.728 kb on + strand, within EX28DRAFT_1867 at 1881.738 kb on + strand, within EX28DRAFT_1867 at 1881.738 kb on + strand, within EX28DRAFT_1867 at 1881.739 kb on - strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.915 kb on + strand, within EX28DRAFT_1867 at 1881.916 kb on - strand, within EX28DRAFT_1867 at 1881.916 kb on - strand, within EX28DRAFT_1867 at 1881.916 kb on - strand, within EX28DRAFT_1867 at 1881.916 kb on - strand, within EX28DRAFT_1867 at 1881.916 kb on - strand, within EX28DRAFT_1867 at 1881.916 kb on - strand, within EX28DRAFT_1867 at 1881.916 kb on - strand, within EX28DRAFT_1867 at 1881.993 kb on + strand, within EX28DRAFT_1867 at 1881.993 kb on + strand, within EX28DRAFT_1867 at 1881.993 kb on + strand, within EX28DRAFT_1867 at 1881.993 kb on + strand, within EX28DRAFT_1867 at 1881.994 kb on - strand, within EX28DRAFT_1867 at 1881.994 kb on - strand, within EX28DRAFT_1867 at 1881.994 kb on - strand, within EX28DRAFT_1867 at 1881.994 kb on - strand, within EX28DRAFT_1867 at 1881.994 kb on - strand, within EX28DRAFT_1867 at 1881.994 kb on - strand, within EX28DRAFT_1867 at 1882.279 kb on + strand at 1882.279 kb on + strand at 1882.279 kb on + strand at 1882.280 kb on - strand at 1882.325 kb on + strand at 1882.325 kb on + strand at 1882.325 kb on + strand at 1882.355 kb on - strand at 1882.400 kb on + strand, within EX28DRAFT_1868 at 1882.738 kb on - strand, within EX28DRAFT_1868 at 1882.761 kb on + strand, within EX28DRAFT_1868 at 1882.783 kb on - strand, within EX28DRAFT_1868 at 1882.841 kb on + strand at 1882.842 kb on - strand at 1882.843 kb on + strand at 1882.865 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,881,474 + EX28DRAFT_1867 0.40 +0.9 1,881,515 + EX28DRAFT_1867 0.43 +1.1 1,881,630 + EX28DRAFT_1867 0.53 -1.5 1,881,630 + EX28DRAFT_1867 0.53 +2.9 1,881,631 - EX28DRAFT_1867 0.53 +1.7 1,881,631 - EX28DRAFT_1867 0.53 -0.5 1,881,631 - EX28DRAFT_1867 0.53 +0.6 1,881,631 - EX28DRAFT_1867 0.53 +0.4 1,881,631 - EX28DRAFT_1867 0.53 +0.9 1,881,631 - EX28DRAFT_1867 0.53 +1.5 1,881,654 + EX28DRAFT_1867 0.55 +0.1 1,881,654 + EX28DRAFT_1867 0.55 -0.1 1,881,654 + EX28DRAFT_1867 0.55 +0.5 1,881,654 + EX28DRAFT_1867 0.55 -0.1 1,881,655 - EX28DRAFT_1867 0.55 -0.2 1,881,655 - EX28DRAFT_1867 0.55 +0.3 1,881,655 - EX28DRAFT_1867 0.55 +0.7 1,881,728 + EX28DRAFT_1867 0.61 -1.5 1,881,738 + EX28DRAFT_1867 0.62 -2.9 1,881,738 + EX28DRAFT_1867 0.62 +0.0 1,881,739 - EX28DRAFT_1867 0.62 -1.5 1,881,915 + EX28DRAFT_1867 0.76 +0.6 1,881,915 + EX28DRAFT_1867 0.76 -0.3 1,881,915 + EX28DRAFT_1867 0.76 +1.9 1,881,915 + EX28DRAFT_1867 0.76 +0.1 1,881,915 + EX28DRAFT_1867 0.76 +0.6 1,881,915 + EX28DRAFT_1867 0.76 -0.0 1,881,915 + EX28DRAFT_1867 0.76 -0.1 1,881,915 + EX28DRAFT_1867 0.76 -0.5 1,881,915 + EX28DRAFT_1867 0.76 -0.0 1,881,916 - EX28DRAFT_1867 0.76 +2.2 1,881,916 - EX28DRAFT_1867 0.76 +0.1 1,881,916 - EX28DRAFT_1867 0.76 -1.4 1,881,916 - EX28DRAFT_1867 0.76 -3.1 1,881,916 - EX28DRAFT_1867 0.76 +0.2 1,881,916 - EX28DRAFT_1867 0.76 +0.7 1,881,916 - EX28DRAFT_1867 0.76 -0.1 1,881,993 + EX28DRAFT_1867 0.83 +0.2 1,881,993 + EX28DRAFT_1867 0.83 -1.9 1,881,993 + EX28DRAFT_1867 0.83 -0.8 1,881,993 + EX28DRAFT_1867 0.83 +1.0 1,881,994 - EX28DRAFT_1867 0.83 +1.0 1,881,994 - EX28DRAFT_1867 0.83 +0.1 1,881,994 - EX28DRAFT_1867 0.83 +0.7 1,881,994 - EX28DRAFT_1867 0.83 -0.1 1,881,994 - EX28DRAFT_1867 0.83 -2.5 1,881,994 - EX28DRAFT_1867 0.83 -0.1 1,882,279 + +0.7 1,882,279 + +0.8 1,882,279 + -0.1 1,882,280 - +1.1 1,882,325 + +1.5 1,882,325 + +1.6 1,882,325 + -0.5 1,882,355 - -2.6 1,882,400 + EX28DRAFT_1868 0.13 -0.1 1,882,738 - EX28DRAFT_1868 0.73 +1.9 1,882,761 + EX28DRAFT_1868 0.78 +1.0 1,882,783 - EX28DRAFT_1868 0.81 +0.7 1,882,841 + -1.6 1,882,842 - +0.8 1,882,843 + +0.1 1,882,865 + -0.6
Or see this region's nucleotide sequence