Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1809

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1808 and EX28DRAFT_1809 are separated by 236 nucleotidesEX28DRAFT_1809 and EX28DRAFT_1810 are separated by 45 nucleotidesEX28DRAFT_1810 and EX28DRAFT_1811 are separated by 14 nucleotides EX28DRAFT_1808: EX28DRAFT_1808 - Predicted signal transduction protein containing EAL and modified HD-GYP domains, at 1,822,718 to 1,823,947 _1808 EX28DRAFT_1809: EX28DRAFT_1809 - Methyl-accepting chemotaxis protein, at 1,824,184 to 1,826,115 _1809 EX28DRAFT_1810: EX28DRAFT_1810 - NAD-dependent protein deacetylases, SIR2 family, at 1,826,161 to 1,826,982 _1810 EX28DRAFT_1811: EX28DRAFT_1811 - Transcriptional regulator/sugar kinase, at 1,826,997 to 1,827,908 _1811 Position (kb) 1824 1825 1826 1827Strain fitness (log2 ratio) -2 -1 0 1 2at 1823.207 kb on - strand, within EX28DRAFT_1808at 1823.239 kb on + strand, within EX28DRAFT_1808at 1823.363 kb on - strand, within EX28DRAFT_1808at 1823.730 kb on - strand, within EX28DRAFT_1808at 1823.755 kb on + strand, within EX28DRAFT_1808at 1823.764 kb on + strand, within EX28DRAFT_1808at 1823.764 kb on + strand, within EX28DRAFT_1808at 1823.764 kb on + strand, within EX28DRAFT_1808at 1823.764 kb on + strand, within EX28DRAFT_1808at 1823.799 kb on - strand, within EX28DRAFT_1808at 1823.799 kb on - strand, within EX28DRAFT_1808at 1823.832 kb on + strandat 1823.971 kb on - strandat 1824.074 kb on + strandat 1824.375 kb on + strandat 1824.644 kb on + strand, within EX28DRAFT_1809at 1824.685 kb on + strand, within EX28DRAFT_1809at 1824.688 kb on + strand, within EX28DRAFT_1809at 1824.688 kb on + strand, within EX28DRAFT_1809at 1824.689 kb on - strand, within EX28DRAFT_1809at 1824.712 kb on - strand, within EX28DRAFT_1809at 1824.734 kb on - strand, within EX28DRAFT_1809at 1824.735 kb on + strand, within EX28DRAFT_1809at 1824.735 kb on + strand, within EX28DRAFT_1809at 1824.736 kb on - strand, within EX28DRAFT_1809at 1824.736 kb on - strand, within EX28DRAFT_1809at 1824.740 kb on - strand, within EX28DRAFT_1809at 1824.740 kb on - strand, within EX28DRAFT_1809at 1824.745 kb on + strand, within EX28DRAFT_1809at 1825.057 kb on - strand, within EX28DRAFT_1809at 1825.155 kb on - strand, within EX28DRAFT_1809at 1825.201 kb on - strand, within EX28DRAFT_1809at 1825.368 kb on + strand, within EX28DRAFT_1809at 1825.391 kb on + strand, within EX28DRAFT_1809at 1825.515 kb on + strand, within EX28DRAFT_1809at 1825.638 kb on + strand, within EX28DRAFT_1809at 1826.007 kb on + strandat 1826.077 kb on - strandat 1826.113 kb on + strandat 1826.113 kb on + strandat 1826.117 kb on + strandat 1826.219 kb on + strandat 1826.278 kb on - strand, within EX28DRAFT_1810at 1826.278 kb on - strand, within EX28DRAFT_1810at 1826.352 kb on + strand, within EX28DRAFT_1810at 1826.382 kb on - strand, within EX28DRAFT_1810at 1826.466 kb on + strand, within EX28DRAFT_1810at 1826.467 kb on - strand, within EX28DRAFT_1810at 1826.467 kb on - strand, within EX28DRAFT_1810at 1826.480 kb on - strand, within EX28DRAFT_1810at 1826.754 kb on + strand, within EX28DRAFT_1810at 1826.982 kb on + strandat 1826.983 kb on - strandat 1826.983 kb on - strandat 1826.993 kb on + strandat 1826.998 kb on + strandat 1827.090 kb on + strand, within EX28DRAFT_1811at 1827.090 kb on + strand, within EX28DRAFT_1811

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,823,207 - EX28DRAFT_1808 0.40 +0.4
1,823,239 + EX28DRAFT_1808 0.42 -0.0
1,823,363 - EX28DRAFT_1808 0.52 +0.7
1,823,730 - EX28DRAFT_1808 0.82 -0.6
1,823,755 + EX28DRAFT_1808 0.84 +0.7
1,823,764 + EX28DRAFT_1808 0.85 +0.7
1,823,764 + EX28DRAFT_1808 0.85 -2.7
1,823,764 + EX28DRAFT_1808 0.85 +1.3
1,823,764 + EX28DRAFT_1808 0.85 -1.3
1,823,799 - EX28DRAFT_1808 0.88 +0.0
1,823,799 - EX28DRAFT_1808 0.88 +0.2
1,823,832 + -0.0
1,823,971 - +0.6
1,824,074 + -0.2
1,824,375 + +0.5
1,824,644 + EX28DRAFT_1809 0.24 -0.6
1,824,685 + EX28DRAFT_1809 0.26 -1.9
1,824,688 + EX28DRAFT_1809 0.26 +0.4
1,824,688 + EX28DRAFT_1809 0.26 +0.1
1,824,689 - EX28DRAFT_1809 0.26 -2.7
1,824,712 - EX28DRAFT_1809 0.27 -1.3
1,824,734 - EX28DRAFT_1809 0.28 -0.6
1,824,735 + EX28DRAFT_1809 0.29 +0.1
1,824,735 + EX28DRAFT_1809 0.29 -1.3
1,824,736 - EX28DRAFT_1809 0.29 +0.3
1,824,736 - EX28DRAFT_1809 0.29 -0.6
1,824,740 - EX28DRAFT_1809 0.29 +1.2
1,824,740 - EX28DRAFT_1809 0.29 -0.0
1,824,745 + EX28DRAFT_1809 0.29 +0.3
1,825,057 - EX28DRAFT_1809 0.45 +2.0
1,825,155 - EX28DRAFT_1809 0.50 -0.2
1,825,201 - EX28DRAFT_1809 0.53 -0.3
1,825,368 + EX28DRAFT_1809 0.61 +0.4
1,825,391 + EX28DRAFT_1809 0.62 -0.4
1,825,515 + EX28DRAFT_1809 0.69 -0.4
1,825,638 + EX28DRAFT_1809 0.75 +0.8
1,826,007 + +0.1
1,826,077 - -2.4
1,826,113 + +0.3
1,826,113 + -0.0
1,826,117 + -0.1
1,826,219 + -0.7
1,826,278 - EX28DRAFT_1810 0.14 +0.1
1,826,278 - EX28DRAFT_1810 0.14 -0.6
1,826,352 + EX28DRAFT_1810 0.23 +0.6
1,826,382 - EX28DRAFT_1810 0.27 +0.7
1,826,466 + EX28DRAFT_1810 0.37 -0.6
1,826,467 - EX28DRAFT_1810 0.37 +0.2
1,826,467 - EX28DRAFT_1810 0.37 +0.8
1,826,480 - EX28DRAFT_1810 0.39 -0.4
1,826,754 + EX28DRAFT_1810 0.72 +1.2
1,826,982 + +0.9
1,826,983 - +0.1
1,826,983 - -0.9
1,826,993 + -0.7
1,826,998 + -2.4
1,827,090 + EX28DRAFT_1811 0.10 -1.6
1,827,090 + EX28DRAFT_1811 0.10 -0.7

Or see this region's nucleotide sequence