Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1782

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1781 and EX28DRAFT_1782 are separated by 32 nucleotidesEX28DRAFT_1782 and EX28DRAFT_1783 are separated by 101 nucleotidesEX28DRAFT_1783 and EX28DRAFT_1784 are separated by 0 nucleotidesEX28DRAFT_1784 and EX28DRAFT_1785 are separated by 80 nucleotides EX28DRAFT_1781: EX28DRAFT_1781 - cyanate transporter, at 1,797,083 to 1,798,270 _1781 EX28DRAFT_1782: EX28DRAFT_1782 - Glutamine amidotransferase class-I, at 1,798,303 to 1,799,010 _1782 EX28DRAFT_1783: EX28DRAFT_1783 - Uncharacterized conserved protein, at 1,799,112 to 1,799,456 _1783 EX28DRAFT_1784: EX28DRAFT_1784 - hypothetical protein, at 1,799,457 to 1,799,762 _1784 EX28DRAFT_1785: EX28DRAFT_1785 - Putative hemolysin, at 1,799,843 to 1,800,097 _1785 Position (kb) 1798 1799 1800Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1797.460 kb on + strand, within EX28DRAFT_1781at 1797.504 kb on - strand, within EX28DRAFT_1781at 1797.504 kb on - strand, within EX28DRAFT_1781at 1797.761 kb on + strand, within EX28DRAFT_1781at 1797.970 kb on + strand, within EX28DRAFT_1781at 1797.971 kb on - strand, within EX28DRAFT_1781at 1798.461 kb on + strand, within EX28DRAFT_1782at 1798.462 kb on - strand, within EX28DRAFT_1782at 1798.462 kb on - strand, within EX28DRAFT_1782at 1798.506 kb on - strand, within EX28DRAFT_1782at 1798.506 kb on - strand, within EX28DRAFT_1782at 1798.506 kb on - strand, within EX28DRAFT_1782at 1798.506 kb on - strand, within EX28DRAFT_1782at 1798.506 kb on - strand, within EX28DRAFT_1782at 1798.506 kb on - strand, within EX28DRAFT_1782at 1798.509 kb on + strand, within EX28DRAFT_1782at 1798.510 kb on - strand, within EX28DRAFT_1782at 1798.510 kb on - strand, within EX28DRAFT_1782at 1798.564 kb on - strand, within EX28DRAFT_1782at 1798.691 kb on + strand, within EX28DRAFT_1782at 1798.691 kb on + strand, within EX28DRAFT_1782at 1798.792 kb on - strand, within EX28DRAFT_1782at 1798.794 kb on - strand, within EX28DRAFT_1782at 1798.944 kb on + strandat 1798.959 kb on - strandat 1799.035 kb on + strandat 1799.036 kb on - strandat 1799.048 kb on - strandat 1799.048 kb on - strandat 1799.048 kb on - strandat 1799.092 kb on + strandat 1799.092 kb on + strandat 1799.111 kb on + strandat 1799.112 kb on - strandat 1799.112 kb on - strandat 1799.132 kb on - strandat 1799.133 kb on + strandat 1799.257 kb on + strand, within EX28DRAFT_1783at 1799.258 kb on - strand, within EX28DRAFT_1783at 1799.258 kb on - strand, within EX28DRAFT_1783at 1799.262 kb on - strand, within EX28DRAFT_1783at 1799.313 kb on - strand, within EX28DRAFT_1783at 1799.392 kb on - strand, within EX28DRAFT_1783at 1799.428 kb on + strandat 1799.429 kb on - strandat 1799.688 kb on - strand, within EX28DRAFT_1784at 1799.750 kb on + strandat 1799.750 kb on + strandat 1799.762 kb on + strandat 1799.763 kb on - strandat 1799.763 kb on - strandat 1799.763 kb on - strandat 1799.803 kb on + strandat 1799.809 kb on + strandat 1799.810 kb on - strandat 1799.833 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.836 kb on - strandat 1799.836 kb on - strandat 1799.836 kb on - strandat 1799.836 kb on - strandat 1799.836 kb on - strandat 1799.927 kb on + strand, within EX28DRAFT_1785at 1800.001 kb on + strand, within EX28DRAFT_1785

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,797,460 + EX28DRAFT_1781 0.32 -0.9
1,797,504 - EX28DRAFT_1781 0.35 -0.2
1,797,504 - EX28DRAFT_1781 0.35 +0.5
1,797,761 + EX28DRAFT_1781 0.57 +0.7
1,797,970 + EX28DRAFT_1781 0.75 -0.3
1,797,971 - EX28DRAFT_1781 0.75 +0.4
1,798,461 + EX28DRAFT_1782 0.22 +1.3
1,798,462 - EX28DRAFT_1782 0.22 -0.8
1,798,462 - EX28DRAFT_1782 0.22 -0.2
1,798,506 - EX28DRAFT_1782 0.29 -0.3
1,798,506 - EX28DRAFT_1782 0.29 -0.1
1,798,506 - EX28DRAFT_1782 0.29 +0.8
1,798,506 - EX28DRAFT_1782 0.29 +0.5
1,798,506 - EX28DRAFT_1782 0.29 +0.5
1,798,506 - EX28DRAFT_1782 0.29 -1.1
1,798,509 + EX28DRAFT_1782 0.29 +1.2
1,798,510 - EX28DRAFT_1782 0.29 +0.5
1,798,510 - EX28DRAFT_1782 0.29 -0.7
1,798,564 - EX28DRAFT_1782 0.37 -0.2
1,798,691 + EX28DRAFT_1782 0.55 +0.6
1,798,691 + EX28DRAFT_1782 0.55 +0.8
1,798,792 - EX28DRAFT_1782 0.69 -0.8
1,798,794 - EX28DRAFT_1782 0.69 -0.7
1,798,944 + -0.2
1,798,959 - +0.3
1,799,035 + -0.1
1,799,036 - +2.2
1,799,048 - -1.1
1,799,048 - +0.0
1,799,048 - +0.3
1,799,092 + +1.6
1,799,092 + +0.8
1,799,111 + -1.0
1,799,112 - +0.1
1,799,112 - +0.1
1,799,132 - +0.9
1,799,133 + -0.9
1,799,257 + EX28DRAFT_1783 0.42 +0.5
1,799,258 - EX28DRAFT_1783 0.42 +0.2
1,799,258 - EX28DRAFT_1783 0.42 -0.0
1,799,262 - EX28DRAFT_1783 0.43 -0.5
1,799,313 - EX28DRAFT_1783 0.58 -0.3
1,799,392 - EX28DRAFT_1783 0.81 +0.1
1,799,428 + +0.1
1,799,429 - -0.3
1,799,688 - EX28DRAFT_1784 0.75 -0.3
1,799,750 + +0.2
1,799,750 + +1.7
1,799,762 + -0.3
1,799,763 - +0.2
1,799,763 - +0.2
1,799,763 - -3.0
1,799,803 + +0.9
1,799,809 + +0.3
1,799,810 - +0.3
1,799,833 + +0.7
1,799,835 + -0.3
1,799,835 + +0.7
1,799,835 + +0.6
1,799,835 + -0.7
1,799,835 + -0.1
1,799,835 + -2.1
1,799,835 + -0.4
1,799,836 - -0.2
1,799,836 - -0.7
1,799,836 - -0.3
1,799,836 - +0.1
1,799,836 - -0.1
1,799,927 + EX28DRAFT_1785 0.33 +0.5
1,800,001 + EX28DRAFT_1785 0.62 -0.9

Or see this region's nucleotide sequence