Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1728

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1727 and EX28DRAFT_1728 are separated by 229 nucleotidesEX28DRAFT_1728 and EX28DRAFT_1729 are separated by 106 nucleotidesEX28DRAFT_1729 and EX28DRAFT_1730 are separated by 105 nucleotides EX28DRAFT_1727: EX28DRAFT_1727 - Putative salt-induced outer membrane protein, at 1,742,816 to 1,743,640 _1727 EX28DRAFT_1728: EX28DRAFT_1728 - hexose kinase, 1-phosphofructokinase family, at 1,743,870 to 1,744,802 _1728 EX28DRAFT_1729: EX28DRAFT_1729 - Protein of unknown function (DUF2622), at 1,744,909 to 1,745,199 _1729 EX28DRAFT_1730: EX28DRAFT_1730 - Fructosamine-3-kinase, at 1,745,305 to 1,746,165 _1730 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1742.904 kb on + strand, within EX28DRAFT_1727at 1742.904 kb on + strand, within EX28DRAFT_1727at 1743.036 kb on + strand, within EX28DRAFT_1727at 1743.036 kb on + strand, within EX28DRAFT_1727at 1743.037 kb on - strand, within EX28DRAFT_1727at 1743.037 kb on - strand, within EX28DRAFT_1727at 1743.202 kb on - strand, within EX28DRAFT_1727at 1743.237 kb on + strand, within EX28DRAFT_1727at 1743.244 kb on - strand, within EX28DRAFT_1727at 1743.259 kb on - strand, within EX28DRAFT_1727at 1743.266 kb on - strand, within EX28DRAFT_1727at 1743.282 kb on + strand, within EX28DRAFT_1727at 1743.283 kb on - strand, within EX28DRAFT_1727at 1743.374 kb on - strand, within EX28DRAFT_1727at 1743.423 kb on + strand, within EX28DRAFT_1727at 1743.592 kb on - strandat 1743.687 kb on + strandat 1743.687 kb on + strandat 1743.692 kb on + strandat 1743.692 kb on + strandat 1743.752 kb on - strandat 1743.753 kb on + strandat 1743.754 kb on - strandat 1743.808 kb on + strandat 1743.808 kb on + strandat 1743.855 kb on + strandat 1743.879 kb on - strandat 1743.883 kb on - strandat 1743.883 kb on - strandat 1743.885 kb on - strandat 1744.252 kb on + strand, within EX28DRAFT_1728at 1744.442 kb on - strand, within EX28DRAFT_1728at 1744.442 kb on - strand, within EX28DRAFT_1728at 1744.532 kb on - strand, within EX28DRAFT_1728at 1744.532 kb on - strand, within EX28DRAFT_1728at 1744.870 kb on + strandat 1744.876 kb on - strandat 1744.934 kb on - strandat 1745.020 kb on - strand, within EX28DRAFT_1729at 1745.043 kb on + strand, within EX28DRAFT_1729at 1745.054 kb on + strand, within EX28DRAFT_1729at 1745.054 kb on + strand, within EX28DRAFT_1729at 1745.055 kb on - strand, within EX28DRAFT_1729at 1745.055 kb on - strand, within EX28DRAFT_1729at 1745.166 kb on + strand, within EX28DRAFT_1729at 1745.166 kb on + strand, within EX28DRAFT_1729at 1745.166 kb on + strand, within EX28DRAFT_1729at 1745.167 kb on - strand, within EX28DRAFT_1729at 1745.197 kb on + strandat 1745.198 kb on - strandat 1745.198 kb on - strandat 1745.274 kb on - strandat 1745.330 kb on + strandat 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.408 kb on + strand, within EX28DRAFT_1730at 1745.465 kb on + strand, within EX28DRAFT_1730at 1745.466 kb on - strand, within EX28DRAFT_1730at 1745.558 kb on - strand, within EX28DRAFT_1730at 1745.578 kb on + strand, within EX28DRAFT_1730at 1745.607 kb on + strand, within EX28DRAFT_1730

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,742,904 + EX28DRAFT_1727 0.11 -0.3
1,742,904 + EX28DRAFT_1727 0.11 +0.3
1,743,036 + EX28DRAFT_1727 0.27 +1.1
1,743,036 + EX28DRAFT_1727 0.27 -0.1
1,743,037 - EX28DRAFT_1727 0.27 -0.4
1,743,037 - EX28DRAFT_1727 0.27 -0.4
1,743,202 - EX28DRAFT_1727 0.47 +0.2
1,743,237 + EX28DRAFT_1727 0.51 -0.4
1,743,244 - EX28DRAFT_1727 0.52 +0.3
1,743,259 - EX28DRAFT_1727 0.54 -0.2
1,743,266 - EX28DRAFT_1727 0.55 -0.4
1,743,282 + EX28DRAFT_1727 0.56 -0.5
1,743,283 - EX28DRAFT_1727 0.57 -0.3
1,743,374 - EX28DRAFT_1727 0.68 -3.8
1,743,423 + EX28DRAFT_1727 0.74 -0.3
1,743,592 - -0.7
1,743,687 + +0.1
1,743,687 + +1.3
1,743,692 + +1.4
1,743,692 + -1.3
1,743,752 - +0.3
1,743,753 + +1.2
1,743,754 - +0.4
1,743,808 + +0.3
1,743,808 + -0.1
1,743,855 + +0.5
1,743,879 - +0.9
1,743,883 - -0.8
1,743,883 - +1.0
1,743,885 - +0.2
1,744,252 + EX28DRAFT_1728 0.41 +0.4
1,744,442 - EX28DRAFT_1728 0.61 +0.2
1,744,442 - EX28DRAFT_1728 0.61 +1.7
1,744,532 - EX28DRAFT_1728 0.71 -0.0
1,744,532 - EX28DRAFT_1728 0.71 -0.0
1,744,870 + -0.4
1,744,876 - -0.0
1,744,934 - -0.3
1,745,020 - EX28DRAFT_1729 0.38 +1.4
1,745,043 + EX28DRAFT_1729 0.46 -0.2
1,745,054 + EX28DRAFT_1729 0.50 +0.4
1,745,054 + EX28DRAFT_1729 0.50 +0.4
1,745,055 - EX28DRAFT_1729 0.50 +0.0
1,745,055 - EX28DRAFT_1729 0.50 -0.5
1,745,166 + EX28DRAFT_1729 0.88 +0.3
1,745,166 + EX28DRAFT_1729 0.88 -0.2
1,745,166 + EX28DRAFT_1729 0.88 +0.4
1,745,167 - EX28DRAFT_1729 0.89 -0.3
1,745,197 + -0.3
1,745,198 - -1.3
1,745,198 - +0.0
1,745,274 - -2.3
1,745,330 + -0.2
1,745,408 + EX28DRAFT_1730 0.12 +1.6
1,745,408 + EX28DRAFT_1730 0.12 -1.0
1,745,408 + EX28DRAFT_1730 0.12 +0.1
1,745,408 + EX28DRAFT_1730 0.12 +0.3
1,745,408 + EX28DRAFT_1730 0.12 -0.5
1,745,465 + EX28DRAFT_1730 0.19 +0.2
1,745,466 - EX28DRAFT_1730 0.19 +0.1
1,745,558 - EX28DRAFT_1730 0.29 -0.4
1,745,578 + EX28DRAFT_1730 0.32 +1.2
1,745,607 + EX28DRAFT_1730 0.35 +0.3

Or see this region's nucleotide sequence