Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1629

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1627 and EX28DRAFT_1628 are separated by 2 nucleotidesEX28DRAFT_1628 and EX28DRAFT_1629 overlap by 4 nucleotidesEX28DRAFT_1629 and EX28DRAFT_1630 are separated by 591 nucleotides EX28DRAFT_1627: EX28DRAFT_1627 - electron transport complex, RnfABCDGE type, G subunit, at 1,645,108 to 1,645,728 _1627 EX28DRAFT_1628: EX28DRAFT_1628 - electron transport complex, RnfABCDGE type, E subunit, at 1,645,731 to 1,646,417 _1628 EX28DRAFT_1629: EX28DRAFT_1629 - DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-), at 1,646,414 to 1,647,049 _1629 EX28DRAFT_1630: EX28DRAFT_1630 - amino acid/peptide transporter (Peptide:H+ symporter), bacterial, at 1,647,641 to 1,649,149 _1630 Position (kb) 1646 1647 1648Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1645.752 kb on - strandat 1646.335 kb on + strand, within EX28DRAFT_1628at 1646.361 kb on - strandat 1646.619 kb on + strand, within EX28DRAFT_1629at 1646.619 kb on + strand, within EX28DRAFT_1629at 1646.636 kb on + strand, within EX28DRAFT_1629at 1646.724 kb on + strand, within EX28DRAFT_1629at 1646.725 kb on - strand, within EX28DRAFT_1629at 1646.834 kb on - strand, within EX28DRAFT_1629at 1646.834 kb on - strand, within EX28DRAFT_1629at 1646.834 kb on - strand, within EX28DRAFT_1629at 1646.857 kb on + strand, within EX28DRAFT_1629at 1646.858 kb on - strand, within EX28DRAFT_1629at 1646.904 kb on + strand, within EX28DRAFT_1629at 1646.926 kb on + strand, within EX28DRAFT_1629at 1646.966 kb on + strand, within EX28DRAFT_1629at 1646.969 kb on - strand, within EX28DRAFT_1629at 1646.969 kb on - strand, within EX28DRAFT_1629at 1646.969 kb on - strand, within EX28DRAFT_1629at 1647.105 kb on - strandat 1647.105 kb on - strandat 1647.455 kb on - strandat 1647.486 kb on + strandat 1647.563 kb on + strandat 1647.563 kb on + strandat 1647.564 kb on - strandat 1647.567 kb on + strandat 1647.567 kb on + strandat 1647.567 kb on + strandat 1647.567 kb on + strandat 1647.567 kb on + strandat 1647.567 kb on + strandat 1647.567 kb on + strandat 1647.568 kb on - strandat 1647.568 kb on - strandat 1647.568 kb on - strandat 1647.568 kb on - strandat 1647.568 kb on - strandat 1647.568 kb on - strandat 1647.569 kb on + strandat 1647.570 kb on - strandat 1647.577 kb on - strandat 1647.636 kb on + strandat 1647.636 kb on + strandat 1647.637 kb on - strandat 1647.637 kb on - strandat 1647.637 kb on - strandat 1647.638 kb on + strandat 1647.638 kb on + strandat 1647.638 kb on + strandat 1647.638 kb on + strandat 1647.639 kb on - strandat 1647.639 kb on - strandat 1647.639 kb on - strandat 1647.639 kb on - strandat 1647.639 kb on - strandat 1647.639 kb on - strandat 1647.639 kb on - strandat 1647.639 kb on - strandat 1647.659 kb on - strandat 1647.694 kb on + strandat 1647.704 kb on - strandat 1647.713 kb on + strandat 1647.714 kb on - strandat 1647.736 kb on - strandat 1647.802 kb on + strand, within EX28DRAFT_1630at 1647.890 kb on - strand, within EX28DRAFT_1630at 1647.905 kb on - strand, within EX28DRAFT_1630at 1647.989 kb on + strand, within EX28DRAFT_1630at 1647.990 kb on - strand, within EX28DRAFT_1630at 1647.990 kb on - strand, within EX28DRAFT_1630at 1647.990 kb on - strand, within EX28DRAFT_1630at 1647.990 kb on - strand, within EX28DRAFT_1630at 1647.991 kb on + strand, within EX28DRAFT_1630

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,645,752 - -0.2
1,646,335 + EX28DRAFT_1628 0.88 +0.2
1,646,361 - +0.2
1,646,619 + EX28DRAFT_1629 0.32 +1.4
1,646,619 + EX28DRAFT_1629 0.32 +0.4
1,646,636 + EX28DRAFT_1629 0.35 -0.2
1,646,724 + EX28DRAFT_1629 0.49 +0.5
1,646,725 - EX28DRAFT_1629 0.49 -1.2
1,646,834 - EX28DRAFT_1629 0.66 +0.2
1,646,834 - EX28DRAFT_1629 0.66 +1.1
1,646,834 - EX28DRAFT_1629 0.66 +0.5
1,646,857 + EX28DRAFT_1629 0.70 -1.8
1,646,858 - EX28DRAFT_1629 0.70 -3.2
1,646,904 + EX28DRAFT_1629 0.77 -0.0
1,646,926 + EX28DRAFT_1629 0.81 -0.7
1,646,966 + EX28DRAFT_1629 0.87 +1.4
1,646,969 - EX28DRAFT_1629 0.87 +0.4
1,646,969 - EX28DRAFT_1629 0.87 -1.9
1,646,969 - EX28DRAFT_1629 0.87 +0.7
1,647,105 - +0.3
1,647,105 - +0.1
1,647,455 - +3.0
1,647,486 + +0.1
1,647,563 + +0.1
1,647,563 + -0.2
1,647,564 - -0.6
1,647,567 + +0.9
1,647,567 + -3.5
1,647,567 + +1.3
1,647,567 + -0.8
1,647,567 + -3.4
1,647,567 + +1.1
1,647,567 + -0.7
1,647,568 - +0.0
1,647,568 - -0.8
1,647,568 - +1.4
1,647,568 - +1.1
1,647,568 - +0.3
1,647,568 - -1.2
1,647,569 + +0.4
1,647,570 - +1.1
1,647,577 - +0.5
1,647,636 + -0.5
1,647,636 + -0.5
1,647,637 - -0.3
1,647,637 - +0.5
1,647,637 - +1.1
1,647,638 + -0.8
1,647,638 + +0.4
1,647,638 + +0.7
1,647,638 + +0.8
1,647,639 - +1.4
1,647,639 - -2.5
1,647,639 - -0.1
1,647,639 - +0.4
1,647,639 - +0.9
1,647,639 - +0.3
1,647,639 - +0.1
1,647,639 - -0.1
1,647,659 - +0.4
1,647,694 + -0.5
1,647,704 - +0.2
1,647,713 + -0.5
1,647,714 - -0.2
1,647,736 - -0.1
1,647,802 + EX28DRAFT_1630 0.11 +0.4
1,647,890 - EX28DRAFT_1630 0.17 -0.1
1,647,905 - EX28DRAFT_1630 0.17 +0.3
1,647,989 + EX28DRAFT_1630 0.23 +0.2
1,647,990 - EX28DRAFT_1630 0.23 -1.2
1,647,990 - EX28DRAFT_1630 0.23 +2.1
1,647,990 - EX28DRAFT_1630 0.23 -0.5
1,647,990 - EX28DRAFT_1630 0.23 -2.5
1,647,991 + EX28DRAFT_1630 0.23 +1.0

Or see this region's nucleotide sequence