Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1214

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1213 and EX28DRAFT_1214 overlap by 1 nucleotidesEX28DRAFT_1214 and EX28DRAFT_1215 are separated by 24 nucleotides EX28DRAFT_1213: EX28DRAFT_1213 - urea ABC transporter, permease protein UrtC, at 1,230,794 to 1,231,867 _1213 EX28DRAFT_1214: EX28DRAFT_1214 - urea ABC transporter, permease protein UrtB, at 1,231,867 to 1,233,441 _1214 EX28DRAFT_1215: EX28DRAFT_1215 - urea ABC transporter, urea binding protein, at 1,233,466 to 1,234,737 _1215 Position (kb) 1231 1232 1233 1234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1231.053 kb on + strand, within EX28DRAFT_1213at 1231.054 kb on - strand, within EX28DRAFT_1213at 1231.054 kb on - strand, within EX28DRAFT_1213at 1231.054 kb on - strand, within EX28DRAFT_1213at 1231.399 kb on - strand, within EX28DRAFT_1213at 1231.399 kb on - strand, within EX28DRAFT_1213at 1231.546 kb on + strand, within EX28DRAFT_1213at 1231.547 kb on - strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.588 kb on - strand, within EX28DRAFT_1213at 1231.778 kb on + strandat 1231.779 kb on - strandat 1231.921 kb on - strandat 1231.998 kb on + strandat 1232.082 kb on - strand, within EX28DRAFT_1214at 1232.082 kb on - strand, within EX28DRAFT_1214at 1232.281 kb on - strand, within EX28DRAFT_1214at 1232.483 kb on + strand, within EX28DRAFT_1214at 1232.484 kb on - strand, within EX28DRAFT_1214at 1232.567 kb on + strand, within EX28DRAFT_1214at 1232.859 kb on + strand, within EX28DRAFT_1214at 1232.860 kb on - strand, within EX28DRAFT_1214at 1232.896 kb on + strand, within EX28DRAFT_1214at 1232.942 kb on - strand, within EX28DRAFT_1214at 1232.965 kb on + strand, within EX28DRAFT_1214at 1233.248 kb on + strand, within EX28DRAFT_1214at 1233.409 kb on + strandat 1233.409 kb on + strandat 1233.467 kb on + strandat 1233.467 kb on + strandat 1233.747 kb on + strand, within EX28DRAFT_1215at 1233.747 kb on + strand, within EX28DRAFT_1215at 1233.747 kb on + strand, within EX28DRAFT_1215at 1233.748 kb on - strand, within EX28DRAFT_1215at 1233.761 kb on + strand, within EX28DRAFT_1215at 1233.761 kb on + strand, within EX28DRAFT_1215at 1233.762 kb on - strand, within EX28DRAFT_1215at 1233.827 kb on + strand, within EX28DRAFT_1215at 1233.828 kb on - strand, within EX28DRAFT_1215at 1233.837 kb on - strand, within EX28DRAFT_1215at 1233.837 kb on - strand, within EX28DRAFT_1215at 1233.884 kb on + strand, within EX28DRAFT_1215at 1233.885 kb on - strand, within EX28DRAFT_1215at 1234.011 kb on - strand, within EX28DRAFT_1215at 1234.127 kb on + strand, within EX28DRAFT_1215at 1234.127 kb on + strand, within EX28DRAFT_1215at 1234.205 kb on + strand, within EX28DRAFT_1215at 1234.212 kb on - strand, within EX28DRAFT_1215at 1234.313 kb on + strand, within EX28DRAFT_1215at 1234.313 kb on + strand, within EX28DRAFT_1215at 1234.314 kb on - strand, within EX28DRAFT_1215

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,231,053 + EX28DRAFT_1213 0.24 -0.2
1,231,054 - EX28DRAFT_1213 0.24 +1.9
1,231,054 - EX28DRAFT_1213 0.24 +0.3
1,231,054 - EX28DRAFT_1213 0.24 +0.6
1,231,399 - EX28DRAFT_1213 0.56 -0.8
1,231,399 - EX28DRAFT_1213 0.56 +0.0
1,231,546 + EX28DRAFT_1213 0.70 -0.9
1,231,547 - EX28DRAFT_1213 0.70 +0.0
1,231,587 + EX28DRAFT_1213 0.74 +0.5
1,231,587 + EX28DRAFT_1213 0.74 -1.0
1,231,587 + EX28DRAFT_1213 0.74 +0.9
1,231,587 + EX28DRAFT_1213 0.74 -0.6
1,231,587 + EX28DRAFT_1213 0.74 -1.1
1,231,588 - EX28DRAFT_1213 0.74 +0.1
1,231,778 + +0.1
1,231,779 - +0.4
1,231,921 - -2.4
1,231,998 + +0.2
1,232,082 - EX28DRAFT_1214 0.14 +0.6
1,232,082 - EX28DRAFT_1214 0.14 +0.2
1,232,281 - EX28DRAFT_1214 0.26 +0.1
1,232,483 + EX28DRAFT_1214 0.39 -0.1
1,232,484 - EX28DRAFT_1214 0.39 -1.9
1,232,567 + EX28DRAFT_1214 0.44 +1.2
1,232,859 + EX28DRAFT_1214 0.63 +1.3
1,232,860 - EX28DRAFT_1214 0.63 +0.8
1,232,896 + EX28DRAFT_1214 0.65 -0.6
1,232,942 - EX28DRAFT_1214 0.68 +1.4
1,232,965 + EX28DRAFT_1214 0.70 +0.2
1,233,248 + EX28DRAFT_1214 0.88 +0.6
1,233,409 + +0.5
1,233,409 + -0.5
1,233,467 + +0.7
1,233,467 + -0.9
1,233,747 + EX28DRAFT_1215 0.22 -2.9
1,233,747 + EX28DRAFT_1215 0.22 +1.2
1,233,747 + EX28DRAFT_1215 0.22 +0.2
1,233,748 - EX28DRAFT_1215 0.22 +1.6
1,233,761 + EX28DRAFT_1215 0.23 +0.2
1,233,761 + EX28DRAFT_1215 0.23 +0.1
1,233,762 - EX28DRAFT_1215 0.23 -0.3
1,233,827 + EX28DRAFT_1215 0.28 +1.9
1,233,828 - EX28DRAFT_1215 0.28 +0.4
1,233,837 - EX28DRAFT_1215 0.29 -2.4
1,233,837 - EX28DRAFT_1215 0.29 +0.1
1,233,884 + EX28DRAFT_1215 0.33 +0.4
1,233,885 - EX28DRAFT_1215 0.33 -1.4
1,234,011 - EX28DRAFT_1215 0.43 -0.5
1,234,127 + EX28DRAFT_1215 0.52 -0.0
1,234,127 + EX28DRAFT_1215 0.52 +0.4
1,234,205 + EX28DRAFT_1215 0.58 -2.9
1,234,212 - EX28DRAFT_1215 0.59 -3.2
1,234,313 + EX28DRAFT_1215 0.67 +1.2
1,234,313 + EX28DRAFT_1215 0.67 +0.7
1,234,314 - EX28DRAFT_1215 0.67 +0.1

Or see this region's nucleotide sequence