Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0995

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0994 and EX28DRAFT_0995 are separated by 37 nucleotidesEX28DRAFT_0995 and EX28DRAFT_0996 are separated by 275 nucleotidesEX28DRAFT_0996 and EX28DRAFT_0997 are separated by 107 nucleotides EX28DRAFT_0994: EX28DRAFT_0994 - Transcriptional regulator of aromatic amino acids metabolism, at 996,804 to 998,345 _0994 EX28DRAFT_0995: EX28DRAFT_0995 - Domain of unknown function (DUF4432), at 998,383 to 999,591 _0995 EX28DRAFT_0996: EX28DRAFT_0996 - Peroxiredoxin, at 999,867 to 1,000,373 _0996 EX28DRAFT_0997: EX28DRAFT_0997 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,000,481 to 1,001,446 _0997 Position (kb) 998 999 1000Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 997.575 kb on + strand, within EX28DRAFT_0994at 997.598 kb on + strand, within EX28DRAFT_0994at 997.599 kb on - strand, within EX28DRAFT_0994at 997.722 kb on - strand, within EX28DRAFT_0994at 997.730 kb on + strand, within EX28DRAFT_0994at 997.872 kb on + strand, within EX28DRAFT_0994at 997.873 kb on - strand, within EX28DRAFT_0994at 997.902 kb on - strand, within EX28DRAFT_0994at 998.100 kb on + strand, within EX28DRAFT_0994at 998.192 kb on + strandat 998.193 kb on - strandat 998.385 kb on - strandat 998.492 kb on + strandat 998.492 kb on + strandat 998.493 kb on - strandat 998.493 kb on - strandat 998.536 kb on - strand, within EX28DRAFT_0995at 998.536 kb on - strand, within EX28DRAFT_0995at 998.576 kb on + strand, within EX28DRAFT_0995at 998.606 kb on + strand, within EX28DRAFT_0995at 998.638 kb on + strand, within EX28DRAFT_0995at 998.689 kb on - strand, within EX28DRAFT_0995at 998.792 kb on + strand, within EX28DRAFT_0995at 998.793 kb on - strand, within EX28DRAFT_0995at 998.909 kb on + strand, within EX28DRAFT_0995at 998.910 kb on - strand, within EX28DRAFT_0995at 998.910 kb on - strand, within EX28DRAFT_0995at 998.910 kb on - strand, within EX28DRAFT_0995at 998.990 kb on + strand, within EX28DRAFT_0995at 998.990 kb on + strand, within EX28DRAFT_0995at 998.991 kb on - strand, within EX28DRAFT_0995at 999.028 kb on - strand, within EX28DRAFT_0995at 999.114 kb on + strand, within EX28DRAFT_0995at 999.114 kb on + strand, within EX28DRAFT_0995at 999.141 kb on - strand, within EX28DRAFT_0995at 999.182 kb on + strand, within EX28DRAFT_0995at 999.252 kb on + strand, within EX28DRAFT_0995at 999.252 kb on + strand, within EX28DRAFT_0995at 999.253 kb on - strand, within EX28DRAFT_0995at 999.253 kb on - strand, within EX28DRAFT_0995at 999.254 kb on + strand, within EX28DRAFT_0995at 999.254 kb on + strand, within EX28DRAFT_0995at 999.255 kb on - strand, within EX28DRAFT_0995at 999.317 kb on - strand, within EX28DRAFT_0995at 999.317 kb on - strand, within EX28DRAFT_0995at 999.378 kb on + strand, within EX28DRAFT_0995at 999.593 kb on + strandat 999.847 kb on + strandat 999.849 kb on + strandat 999.850 kb on - strandat 999.865 kb on + strandat 1000.064 kb on + strand, within EX28DRAFT_0996at 1000.065 kb on - strand, within EX28DRAFT_0996at 1000.175 kb on + strand, within EX28DRAFT_0996at 1000.289 kb on + strand, within EX28DRAFT_0996at 1000.373 kb on + strandat 1000.373 kb on + strandat 1000.374 kb on - strandat 1000.374 kb on - strandat 1000.374 kb on - strandat 1000.374 kb on - strandat 1000.377 kb on + strandat 1000.378 kb on - strandat 1000.390 kb on - strandat 1000.393 kb on + strandat 1000.393 kb on + strandat 1000.394 kb on - strandat 1000.394 kb on - strandat 1000.395 kb on + strandat 1000.396 kb on - strandat 1000.396 kb on - strandat 1000.396 kb on - strandat 1000.416 kb on + strandat 1000.416 kb on + strandat 1000.417 kb on - strandat 1000.500 kb on - strandat 1000.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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997,575 + EX28DRAFT_0994 0.50 -2.0
997,598 + EX28DRAFT_0994 0.51 -0.5
997,599 - EX28DRAFT_0994 0.52 -2.2
997,722 - EX28DRAFT_0994 0.60 +0.1
997,730 + EX28DRAFT_0994 0.60 -2.3
997,872 + EX28DRAFT_0994 0.69 -0.9
997,873 - EX28DRAFT_0994 0.69 -1.8
997,902 - EX28DRAFT_0994 0.71 -1.2
998,100 + EX28DRAFT_0994 0.84 +1.0
998,192 + -0.4
998,193 - +0.4
998,385 - -0.9
998,492 + -0.2
998,492 + +1.5
998,493 - -0.2
998,493 - -0.4
998,536 - EX28DRAFT_0995 0.13 -0.2
998,536 - EX28DRAFT_0995 0.13 -5.2
998,576 + EX28DRAFT_0995 0.16 +0.9
998,606 + EX28DRAFT_0995 0.18 -0.8
998,638 + EX28DRAFT_0995 0.21 -3.2
998,689 - EX28DRAFT_0995 0.25 +0.3
998,792 + EX28DRAFT_0995 0.34 -0.6
998,793 - EX28DRAFT_0995 0.34 +1.3
998,909 + EX28DRAFT_0995 0.44 +0.8
998,910 - EX28DRAFT_0995 0.44 +0.8
998,910 - EX28DRAFT_0995 0.44 -0.1
998,910 - EX28DRAFT_0995 0.44 -0.7
998,990 + EX28DRAFT_0995 0.50 +0.5
998,990 + EX28DRAFT_0995 0.50 -2.4
998,991 - EX28DRAFT_0995 0.50 +0.1
999,028 - EX28DRAFT_0995 0.53 -2.0
999,114 + EX28DRAFT_0995 0.60 -0.3
999,114 + EX28DRAFT_0995 0.60 -1.1
999,141 - EX28DRAFT_0995 0.63 +1.0
999,182 + EX28DRAFT_0995 0.66 +1.0
999,252 + EX28DRAFT_0995 0.72 +0.7
999,252 + EX28DRAFT_0995 0.72 +0.3
999,253 - EX28DRAFT_0995 0.72 +0.7
999,253 - EX28DRAFT_0995 0.72 +0.4
999,254 + EX28DRAFT_0995 0.72 +1.4
999,254 + EX28DRAFT_0995 0.72 -0.1
999,255 - EX28DRAFT_0995 0.72 -0.9
999,317 - EX28DRAFT_0995 0.77 +0.5
999,317 - EX28DRAFT_0995 0.77 +0.0
999,378 + EX28DRAFT_0995 0.82 -0.6
999,593 + -1.4
999,847 + +1.4
999,849 + +0.0
999,850 - -0.7
999,865 + -0.4
1,000,064 + EX28DRAFT_0996 0.39 +0.8
1,000,065 - EX28DRAFT_0996 0.39 +2.4
1,000,175 + EX28DRAFT_0996 0.61 +0.3
1,000,289 + EX28DRAFT_0996 0.83 -0.0
1,000,373 + +0.5
1,000,373 + -0.4
1,000,374 - -2.2
1,000,374 - +0.7
1,000,374 - -0.8
1,000,374 - +0.7
1,000,377 + -0.9
1,000,378 - +0.8
1,000,390 - -0.1
1,000,393 + +2.1
1,000,393 + +0.3
1,000,394 - -0.9
1,000,394 - +1.2
1,000,395 + +0.8
1,000,396 - -0.2
1,000,396 - -0.1
1,000,396 - +1.4
1,000,416 + +0.1
1,000,416 + -2.2
1,000,417 - -1.5
1,000,500 - -2.5
1,000,523 - -0.4

Or see this region's nucleotide sequence