Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0811

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0809 and EX28DRAFT_0810 are separated by 58 nucleotidesEX28DRAFT_0810 and EX28DRAFT_0811 are separated by 115 nucleotidesEX28DRAFT_0811 and EX28DRAFT_0812 are separated by 3 nucleotides EX28DRAFT_0809: EX28DRAFT_0809 - Rhs element Vgr protein, at 811,610 to 814,150 _0809 EX28DRAFT_0810: EX28DRAFT_0810 - hypothetical protein, at 814,209 to 814,643 _0810 EX28DRAFT_0811: EX28DRAFT_0811 - hypothetical protein, at 814,759 to 815,274 _0811 EX28DRAFT_0812: EX28DRAFT_0812 - hypothetical protein, at 815,278 to 816,354 _0812 Position (kb) 814 815 816Strain fitness (log2 ratio) -2 -1 0 1 2at 813.829 kb on - strand, within EX28DRAFT_0809at 813.829 kb on - strand, within EX28DRAFT_0809at 813.830 kb on + strand, within EX28DRAFT_0809at 813.831 kb on - strand, within EX28DRAFT_0809at 813.866 kb on + strand, within EX28DRAFT_0809at 813.992 kb on + strandat 813.992 kb on + strandat 813.992 kb on + strandat 813.992 kb on + strandat 813.993 kb on - strandat 813.994 kb on + strandat 813.994 kb on + strandat 813.994 kb on + strandat 813.995 kb on - strandat 813.997 kb on + strandat 813.998 kb on - strandat 813.998 kb on - strandat 813.998 kb on - strandat 814.000 kb on + strandat 814.000 kb on + strandat 814.001 kb on - strandat 814.005 kb on - strandat 814.005 kb on - strandat 814.005 kb on - strandat 814.005 kb on - strandat 814.028 kb on - strandat 814.028 kb on - strandat 814.049 kb on - strandat 814.049 kb on - strandat 814.116 kb on - strandat 814.118 kb on + strandat 814.131 kb on - strandat 814.148 kb on + strandat 814.148 kb on + strandat 814.641 kb on + strandat 814.694 kb on + strandat 814.716 kb on + strandat 814.716 kb on + strandat 814.716 kb on + strandat 814.716 kb on + strandat 814.800 kb on + strandat 814.955 kb on - strand, within EX28DRAFT_0811at 814.991 kb on + strand, within EX28DRAFT_0811at 814.991 kb on + strand, within EX28DRAFT_0811at 814.991 kb on + strand, within EX28DRAFT_0811at 815.042 kb on - strand, within EX28DRAFT_0811at 815.043 kb on + strand, within EX28DRAFT_0811at 815.043 kb on + strand, within EX28DRAFT_0811at 815.043 kb on + strand, within EX28DRAFT_0811at 815.044 kb on - strand, within EX28DRAFT_0811at 815.182 kb on + strand, within EX28DRAFT_0811at 815.303 kb on + strandat 815.366 kb on - strandat 815.366 kb on - strandat 815.447 kb on - strand, within EX28DRAFT_0812at 815.620 kb on - strand, within EX28DRAFT_0812at 815.641 kb on - strand, within EX28DRAFT_0812at 815.644 kb on - strand, within EX28DRAFT_0812at 815.644 kb on - strand, within EX28DRAFT_0812at 815.655 kb on + strand, within EX28DRAFT_0812at 815.656 kb on - strand, within EX28DRAFT_0812at 815.818 kb on + strand, within EX28DRAFT_0812at 815.818 kb on + strand, within EX28DRAFT_0812at 815.819 kb on - strand, within EX28DRAFT_0812at 815.819 kb on - strand, within EX28DRAFT_0812at 815.819 kb on - strand, within EX28DRAFT_0812at 815.824 kb on + strand, within EX28DRAFT_0812at 815.824 kb on + strand, within EX28DRAFT_0812at 815.824 kb on + strand, within EX28DRAFT_0812at 815.824 kb on + strand, within EX28DRAFT_0812at 815.825 kb on - strand, within EX28DRAFT_0812at 815.826 kb on + strand, within EX28DRAFT_0812at 815.849 kb on + strand, within EX28DRAFT_0812at 815.886 kb on + strand, within EX28DRAFT_0812at 815.886 kb on + strand, within EX28DRAFT_0812at 815.911 kb on - strand, within EX28DRAFT_0812at 815.964 kb on - strand, within EX28DRAFT_0812at 815.964 kb on - strand, within EX28DRAFT_0812at 815.990 kb on + strand, within EX28DRAFT_0812at 815.994 kb on + strand, within EX28DRAFT_0812at 816.037 kb on - strand, within EX28DRAFT_0812at 816.037 kb on - strand, within EX28DRAFT_0812at 816.037 kb on - strand, within EX28DRAFT_0812at 816.042 kb on - strand, within EX28DRAFT_0812at 816.042 kb on - strand, within EX28DRAFT_0812at 816.187 kb on - strand, within EX28DRAFT_0812at 816.187 kb on - strand, within EX28DRAFT_0812at 816.247 kb on + strandat 816.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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813,829 - EX28DRAFT_0809 0.87 +0.6
813,829 - EX28DRAFT_0809 0.87 +0.0
813,830 + EX28DRAFT_0809 0.87 -0.0
813,831 - EX28DRAFT_0809 0.87 +0.3
813,866 + EX28DRAFT_0809 0.89 +0.0
813,992 + -0.7
813,992 + -0.7
813,992 + +0.1
813,992 + -0.2
813,993 - +0.8
813,994 + -0.1
813,994 + -0.1
813,994 + +0.1
813,995 - -0.9
813,997 + +0.7
813,998 - +0.1
813,998 - +0.9
813,998 - +0.9
814,000 + -0.1
814,000 + -0.1
814,001 - -0.1
814,005 - +0.2
814,005 - +0.2
814,005 - +0.0
814,005 - -0.6
814,028 - +0.3
814,028 - +0.9
814,049 - +1.9
814,049 - +1.0
814,116 - +1.3
814,118 + +0.5
814,131 - +1.1
814,148 + +0.3
814,148 + +0.4
814,641 + +0.6
814,694 + -1.4
814,716 + +0.2
814,716 + -1.1
814,716 + +1.4
814,716 + -0.6
814,800 + +0.6
814,955 - EX28DRAFT_0811 0.38 -0.5
814,991 + EX28DRAFT_0811 0.45 +0.3
814,991 + EX28DRAFT_0811 0.45 -0.1
814,991 + EX28DRAFT_0811 0.45 -0.1
815,042 - EX28DRAFT_0811 0.55 +1.7
815,043 + EX28DRAFT_0811 0.55 +1.9
815,043 + EX28DRAFT_0811 0.55 +0.6
815,043 + EX28DRAFT_0811 0.55 +0.4
815,044 - EX28DRAFT_0811 0.55 -0.6
815,182 + EX28DRAFT_0811 0.82 +0.2
815,303 + +0.4
815,366 - -0.6
815,366 - -1.1
815,447 - EX28DRAFT_0812 0.16 +1.4
815,620 - EX28DRAFT_0812 0.32 -0.0
815,641 - EX28DRAFT_0812 0.34 -0.5
815,644 - EX28DRAFT_0812 0.34 -0.4
815,644 - EX28DRAFT_0812 0.34 -1.7
815,655 + EX28DRAFT_0812 0.35 +0.4
815,656 - EX28DRAFT_0812 0.35 +0.5
815,818 + EX28DRAFT_0812 0.50 -0.3
815,818 + EX28DRAFT_0812 0.50 +2.4
815,819 - EX28DRAFT_0812 0.50 -0.6
815,819 - EX28DRAFT_0812 0.50 +0.6
815,819 - EX28DRAFT_0812 0.50 -0.6
815,824 + EX28DRAFT_0812 0.51 -0.4
815,824 + EX28DRAFT_0812 0.51 +0.5
815,824 + EX28DRAFT_0812 0.51 +0.1
815,824 + EX28DRAFT_0812 0.51 +0.9
815,825 - EX28DRAFT_0812 0.51 -1.2
815,826 + EX28DRAFT_0812 0.51 +0.5
815,849 + EX28DRAFT_0812 0.53 -0.6
815,886 + EX28DRAFT_0812 0.56 +0.0
815,886 + EX28DRAFT_0812 0.56 +0.0
815,911 - EX28DRAFT_0812 0.59 -0.7
815,964 - EX28DRAFT_0812 0.64 +1.0
815,964 - EX28DRAFT_0812 0.64 +0.2
815,990 + EX28DRAFT_0812 0.66 -0.7
815,994 + EX28DRAFT_0812 0.66 -0.3
816,037 - EX28DRAFT_0812 0.70 -0.2
816,037 - EX28DRAFT_0812 0.70 -0.9
816,037 - EX28DRAFT_0812 0.70 +0.0
816,042 - EX28DRAFT_0812 0.71 -2.7
816,042 - EX28DRAFT_0812 0.71 +0.3
816,187 - EX28DRAFT_0812 0.84 -0.7
816,187 - EX28DRAFT_0812 0.84 +1.0
816,247 + -0.8
816,271 - +0.4

Or see this region's nucleotide sequence