Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0598

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0596 and EX28DRAFT_0597 are separated by 78 nucleotidesEX28DRAFT_0597 and EX28DRAFT_0598 overlap by 47 nucleotidesEX28DRAFT_0598 and EX28DRAFT_0599 overlap by 4 nucleotides EX28DRAFT_0596: EX28DRAFT_0596 - Uncharacterized protein conserved in bacteria, at 599,218 to 600,129 _0596 EX28DRAFT_0597: EX28DRAFT_0597 - Uncharacterized small protein, at 600,208 to 600,390 _0597 EX28DRAFT_0598: EX28DRAFT_0598 - diguanylate cyclase (GGDEF) domain, at 600,344 to 602,152 _0598 EX28DRAFT_0599: EX28DRAFT_0599 - mannosyl-3-phosphoglycerate phosphatase-related protein, at 602,149 to 602,949 _0599 Position (kb) 600 601 602 603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 599.421 kb on + strand, within EX28DRAFT_0596at 599.422 kb on - strand, within EX28DRAFT_0596at 599.525 kb on + strand, within EX28DRAFT_0596at 599.526 kb on - strand, within EX28DRAFT_0596at 599.568 kb on + strand, within EX28DRAFT_0596at 599.568 kb on + strand, within EX28DRAFT_0596at 599.569 kb on - strand, within EX28DRAFT_0596at 599.780 kb on - strand, within EX28DRAFT_0596at 600.111 kb on - strandat 600.127 kb on + strandat 600.127 kb on + strandat 600.127 kb on + strandat 600.195 kb on - strandat 600.207 kb on + strandat 600.208 kb on - strandat 600.235 kb on - strand, within EX28DRAFT_0597at 600.241 kb on - strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.388 kb on + strandat 600.389 kb on - strandat 600.396 kb on + strandat 600.431 kb on + strandat 600.486 kb on + strandat 600.487 kb on - strandat 600.567 kb on + strand, within EX28DRAFT_0598at 600.617 kb on + strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.634 kb on + strand, within EX28DRAFT_0598at 600.816 kb on + strand, within EX28DRAFT_0598at 600.989 kb on + strand, within EX28DRAFT_0598at 600.990 kb on - strand, within EX28DRAFT_0598at 600.990 kb on - strand, within EX28DRAFT_0598at 601.049 kb on - strand, within EX28DRAFT_0598at 601.061 kb on + strand, within EX28DRAFT_0598at 601.171 kb on + strand, within EX28DRAFT_0598at 601.172 kb on - strand, within EX28DRAFT_0598at 601.196 kb on + strand, within EX28DRAFT_0598at 601.197 kb on - strand, within EX28DRAFT_0598at 601.238 kb on - strand, within EX28DRAFT_0598at 601.323 kb on + strand, within EX28DRAFT_0598at 601.324 kb on + strand, within EX28DRAFT_0598at 601.325 kb on - strand, within EX28DRAFT_0598at 601.571 kb on - strand, within EX28DRAFT_0598at 601.581 kb on + strand, within EX28DRAFT_0598at 601.582 kb on - strand, within EX28DRAFT_0598at 601.625 kb on + strand, within EX28DRAFT_0598at 601.625 kb on + strand, within EX28DRAFT_0598at 601.626 kb on - strand, within EX28DRAFT_0598at 601.626 kb on - strand, within EX28DRAFT_0598at 601.783 kb on + strand, within EX28DRAFT_0598at 601.960 kb on + strand, within EX28DRAFT_0598at 601.981 kb on + strandat 602.064 kb on - strandat 602.266 kb on - strand, within EX28DRAFT_0599at 602.513 kb on - strand, within EX28DRAFT_0599at 602.619 kb on + strand, within EX28DRAFT_0599at 602.711 kb on - strand, within EX28DRAFT_0599at 602.836 kb on - strand, within EX28DRAFT_0599at 602.879 kb on + strandat 602.879 kb on + strandat 602.879 kb on + strandat 602.880 kb on - strandat 602.880 kb on - strandat 602.880 kb on - strandat 602.880 kb on - strandat 602.931 kb on + strandat 602.931 kb on + strandat 602.932 kb on - strandat 603.110 kb on - strandat 603.115 kb on + strandat 603.117 kb on + strandat 603.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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599,421 + EX28DRAFT_0596 0.22 -0.5
599,422 - EX28DRAFT_0596 0.22 +0.2
599,525 + EX28DRAFT_0596 0.34 +0.6
599,526 - EX28DRAFT_0596 0.34 +0.0
599,568 + EX28DRAFT_0596 0.38 +0.5
599,568 + EX28DRAFT_0596 0.38 -2.3
599,569 - EX28DRAFT_0596 0.38 -0.2
599,780 - EX28DRAFT_0596 0.62 +0.9
600,111 - +1.8
600,127 + +0.5
600,127 + -0.6
600,127 + -1.6
600,195 - -4.1
600,207 + +0.3
600,208 - +1.8
600,235 - EX28DRAFT_0597 0.15 +0.5
600,241 - EX28DRAFT_0597 0.18 +0.7
600,258 + EX28DRAFT_0597 0.27 +1.2
600,258 + EX28DRAFT_0597 0.27 +1.2
600,258 + EX28DRAFT_0597 0.27 -0.6
600,259 - EX28DRAFT_0597 0.28 +1.3
600,259 - EX28DRAFT_0597 0.28 -0.6
600,259 - EX28DRAFT_0597 0.28 -0.3
600,259 - EX28DRAFT_0597 0.28 +0.0
600,388 + +0.2
600,389 - +0.2
600,396 + +1.1
600,431 + -0.3
600,486 + +0.4
600,487 - +0.3
600,567 + EX28DRAFT_0598 0.12 -1.0
600,617 + EX28DRAFT_0598 0.15 +0.4
600,618 - EX28DRAFT_0598 0.15 +0.5
600,618 - EX28DRAFT_0598 0.15 +0.8
600,618 - EX28DRAFT_0598 0.15 +2.2
600,634 + EX28DRAFT_0598 0.16 +0.2
600,816 + EX28DRAFT_0598 0.26 -1.0
600,989 + EX28DRAFT_0598 0.36 +0.8
600,990 - EX28DRAFT_0598 0.36 -0.0
600,990 - EX28DRAFT_0598 0.36 -0.3
601,049 - EX28DRAFT_0598 0.39 -0.1
601,061 + EX28DRAFT_0598 0.40 -3.2
601,171 + EX28DRAFT_0598 0.46 -2.7
601,172 - EX28DRAFT_0598 0.46 +0.0
601,196 + EX28DRAFT_0598 0.47 +0.4
601,197 - EX28DRAFT_0598 0.47 +0.8
601,238 - EX28DRAFT_0598 0.49 +1.1
601,323 + EX28DRAFT_0598 0.54 +1.2
601,324 + EX28DRAFT_0598 0.54 +0.1
601,325 - EX28DRAFT_0598 0.54 +1.0
601,571 - EX28DRAFT_0598 0.68 +0.7
601,581 + EX28DRAFT_0598 0.68 -3.3
601,582 - EX28DRAFT_0598 0.68 +0.3
601,625 + EX28DRAFT_0598 0.71 -0.5
601,625 + EX28DRAFT_0598 0.71 +0.4
601,626 - EX28DRAFT_0598 0.71 +0.5
601,626 - EX28DRAFT_0598 0.71 -1.3
601,783 + EX28DRAFT_0598 0.80 -0.3
601,960 + EX28DRAFT_0598 0.89 +1.3
601,981 + +0.2
602,064 - +0.3
602,266 - EX28DRAFT_0599 0.15 -2.0
602,513 - EX28DRAFT_0599 0.45 -2.8
602,619 + EX28DRAFT_0599 0.59 -2.8
602,711 - EX28DRAFT_0599 0.70 +0.0
602,836 - EX28DRAFT_0599 0.86 +1.1
602,879 + -1.5
602,879 + +0.7
602,879 + +0.2
602,880 - -1.0
602,880 - -2.8
602,880 - +0.3
602,880 - +0.7
602,931 + -0.1
602,931 + -0.3
602,932 - +0.4
603,110 - -0.2
603,115 + -0.8
603,117 + -0.6
603,145 + -0.0

Or see this region's nucleotide sequence