Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0565 and EX28DRAFT_0566 are separated by 96 nucleotides EX28DRAFT_0566 and EX28DRAFT_0567 are separated by 43 nucleotides EX28DRAFT_0567 and EX28DRAFT_0568 are separated by 107 nucleotides
EX28DRAFT_0565: EX28DRAFT_0565 - Transcriptional regulator, at 562,069 to 562,986
_0565
EX28DRAFT_0566: EX28DRAFT_0566 - Transcriptional regulator, at 563,083 to 564,033
_0566
EX28DRAFT_0567: EX28DRAFT_0567 - Glutathione S-transferase, at 564,077 to 564,748
_0567
EX28DRAFT_0568: EX28DRAFT_0568 - Transcriptional regulator, at 564,856 to 565,767
_0568
Position (kb) 563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 562.090 kb on + strand at 562.091 kb on - strand at 562.261 kb on + strand, within EX28DRAFT_0565 at 562.261 kb on + strand, within EX28DRAFT_0565 at 562.262 kb on - strand, within EX28DRAFT_0565 at 562.264 kb on - strand, within EX28DRAFT_0565 at 562.383 kb on + strand, within EX28DRAFT_0565 at 562.438 kb on + strand, within EX28DRAFT_0565 at 562.439 kb on - strand, within EX28DRAFT_0565 at 562.604 kb on + strand, within EX28DRAFT_0565 at 562.636 kb on + strand, within EX28DRAFT_0565 at 562.652 kb on - strand, within EX28DRAFT_0565 at 562.652 kb on - strand, within EX28DRAFT_0565 at 562.875 kb on + strand, within EX28DRAFT_0565 at 562.875 kb on + strand, within EX28DRAFT_0565 at 563.002 kb on + strand at 563.047 kb on - strand at 563.058 kb on + strand at 563.058 kb on + strand at 563.059 kb on - strand at 563.059 kb on - strand at 563.059 kb on - strand at 563.059 kb on - strand at 563.059 kb on - strand at 563.101 kb on - strand at 563.131 kb on + strand at 563.155 kb on - strand at 563.161 kb on + strand at 563.161 kb on + strand at 563.162 kb on - strand at 563.162 kb on - strand at 563.163 kb on + strand at 563.164 kb on - strand at 563.164 kb on - strand at 563.283 kb on - strand, within EX28DRAFT_0566 at 563.419 kb on - strand, within EX28DRAFT_0566 at 563.592 kb on - strand, within EX28DRAFT_0566 at 563.592 kb on - strand, within EX28DRAFT_0566 at 563.592 kb on - strand, within EX28DRAFT_0566 at 563.779 kb on + strand, within EX28DRAFT_0566 at 563.929 kb on + strand, within EX28DRAFT_0566 at 563.929 kb on + strand, within EX28DRAFT_0566 at 563.930 kb on - strand, within EX28DRAFT_0566 at 564.032 kb on - strand at 564.188 kb on - strand, within EX28DRAFT_0567 at 564.299 kb on - strand, within EX28DRAFT_0567 at 564.299 kb on - strand, within EX28DRAFT_0567 at 564.354 kb on + strand, within EX28DRAFT_0567 at 564.355 kb on - strand, within EX28DRAFT_0567 at 564.486 kb on - strand, within EX28DRAFT_0567 at 564.510 kb on - strand, within EX28DRAFT_0567 at 564.580 kb on + strand, within EX28DRAFT_0567 at 564.647 kb on + strand, within EX28DRAFT_0567 at 564.651 kb on + strand, within EX28DRAFT_0567 at 564.651 kb on + strand, within EX28DRAFT_0567 at 564.651 kb on + strand, within EX28DRAFT_0567 at 564.651 kb on + strand, within EX28DRAFT_0567 at 564.652 kb on - strand, within EX28DRAFT_0567 at 564.652 kb on - strand, within EX28DRAFT_0567 at 564.680 kb on - strand, within EX28DRAFT_0567 at 564.680 kb on - strand, within EX28DRAFT_0567 at 564.744 kb on + strand at 564.744 kb on + strand at 564.744 kb on + strand at 564.745 kb on - strand at 564.745 kb on - strand at 564.749 kb on + strand at 564.750 kb on - strand at 564.767 kb on + strand at 564.768 kb on - strand at 564.777 kb on - strand at 564.794 kb on - strand at 564.796 kb on + strand at 564.796 kb on + strand at 564.797 kb on - strand at 564.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 562,090 + +1.3 562,091 - +0.1 562,261 + EX28DRAFT_0565 0.21 -0.1 562,261 + EX28DRAFT_0565 0.21 +0.3 562,262 - EX28DRAFT_0565 0.21 -0.3 562,264 - EX28DRAFT_0565 0.21 +2.2 562,383 + EX28DRAFT_0565 0.34 +0.1 562,438 + EX28DRAFT_0565 0.40 +0.7 562,439 - EX28DRAFT_0565 0.40 +0.8 562,604 + EX28DRAFT_0565 0.58 -1.3 562,636 + EX28DRAFT_0565 0.62 +0.2 562,652 - EX28DRAFT_0565 0.64 +0.2 562,652 - EX28DRAFT_0565 0.64 -0.1 562,875 + EX28DRAFT_0565 0.88 -0.8 562,875 + EX28DRAFT_0565 0.88 -0.3 563,002 + +0.2 563,047 - +0.3 563,058 + +0.5 563,058 + +0.2 563,059 - -0.3 563,059 - +0.2 563,059 - +1.7 563,059 - -3.3 563,059 - -1.0 563,101 - +0.2 563,131 + -0.2 563,155 - +0.9 563,161 + +2.2 563,161 + -1.1 563,162 - +1.2 563,162 - -0.5 563,163 + -0.0 563,164 - -0.1 563,164 - -0.3 563,283 - EX28DRAFT_0566 0.21 +0.5 563,419 - EX28DRAFT_0566 0.35 +0.0 563,592 - EX28DRAFT_0566 0.54 +0.8 563,592 - EX28DRAFT_0566 0.54 -0.0 563,592 - EX28DRAFT_0566 0.54 -0.6 563,779 + EX28DRAFT_0566 0.73 +0.4 563,929 + EX28DRAFT_0566 0.89 -0.0 563,929 + EX28DRAFT_0566 0.89 -0.3 563,930 - EX28DRAFT_0566 0.89 -1.4 564,032 - +0.3 564,188 - EX28DRAFT_0567 0.17 +0.3 564,299 - EX28DRAFT_0567 0.33 +0.7 564,299 - EX28DRAFT_0567 0.33 -0.5 564,354 + EX28DRAFT_0567 0.41 +0.8 564,355 - EX28DRAFT_0567 0.41 -0.2 564,486 - EX28DRAFT_0567 0.61 -0.5 564,510 - EX28DRAFT_0567 0.64 -0.2 564,580 + EX28DRAFT_0567 0.75 +0.9 564,647 + EX28DRAFT_0567 0.85 +0.7 564,651 + EX28DRAFT_0567 0.85 -2.3 564,651 + EX28DRAFT_0567 0.85 +0.6 564,651 + EX28DRAFT_0567 0.85 -0.3 564,651 + EX28DRAFT_0567 0.85 -0.0 564,652 - EX28DRAFT_0567 0.86 -0.6 564,652 - EX28DRAFT_0567 0.86 +0.2 564,680 - EX28DRAFT_0567 0.90 -3.3 564,680 - EX28DRAFT_0567 0.90 -1.3 564,744 + -2.3 564,744 + -1.7 564,744 + +0.2 564,745 - -0.4 564,745 - +0.4 564,749 + +0.2 564,750 - -0.0 564,767 + +0.4 564,768 - +0.6 564,777 - +0.7 564,794 - -0.7 564,796 + -0.9 564,796 + -0.6 564,797 - -0.1 564,800 - -0.1
Or see this region's nucleotide sequence