Strain Fitness in Agrobacterium fabrum C58 around Atu4173

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu4172 and Atu4173 are separated by 175 nucleotidesAtu4173 and Atu4174 are separated by 29 nucleotides Atu4172: Atu4172 - aspartate kinase, at 1,291,699 to 1,292,976 Atu4172 Atu4173: Atu4173 - phosphoenolpyruvate-protein phosphotransferase, at 1,293,152 to 1,295,419 Atu4173 Atu4174: Atu4174 - peptide chain release factor 1, at 1,295,449 to 1,296,531 Atu4174 Position (kb) 1293 1294 1295 1296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1292.970 kb on + strandat 1293.046 kb on + strandat 1293.054 kb on - strandat 1293.542 kb on + strand, within Atu4173at 1295.281 kb on + strandat 1295.281 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,292,970 + -0.8
1,293,046 + -0.7
1,293,054 - -0.8
1,293,542 + Atu4173 0.17 -2.4
1,295,281 + -4.7
1,295,281 + -2.3

Or see this region's nucleotide sequence